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Genotype changes in GWAS are ambiguous #204
Open
olivierlabayle opened this issue
Sep 19, 2024
· 1 comment
· May be fixed by TARGENE/TargeneCore.jl#197
Open
Genotype changes in GWAS are ambiguous #204
olivierlabayle opened this issue
Sep 19, 2024
· 1 comment
· May be fixed by TARGENE/TargeneCore.jl#197
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enhancement
New feature or request
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The genotypes in a GWAS are ambiguous because they encode the number of A2 allele in the BED file (see https://openmendel.github.io/SnpArrays.jl/stable/) which could be either the minor or major allele. I see two options to remove any ambiguity:
minorallele
function in the above package to provide the proper encoding).The text was updated successfully, but these errors were encountered: