We are a small team of bioinformaticians working for the University of Turin, based in Turin, Italy. Our team is outlined below. We are part of a bigger organization, the Turin Cell Physiology Lab (TCP-Lab), where we study a wide range of subjects, but mostly centered around cancer and general physiology. You can find CMA-Lab's ResearchGate page here.
We are based in the Department of Life Sciences and Systems Biology, in Via Accademia Albertina, 13, Turin, Italy.
We are currently interested in understanding the role of ion channels and transporters in Cancer and other diseases. Being physiologists by heart, we are mostly interested in the physiological changes of cancer. Here are some of our projects.
- 📜 MTP-DB, a database for transporters.
- 🧫 Transportome Profiler, a pipeline for the transportome analysis.
- 🔧 x.FASTQ, Bash wrapper modules for the remote analysis of RNA-Seq data.
- 📤 SeqLoader, constructors and methods for xSeries and xModel S3 classes
- 📖 ICT.bib, a systematic compilation of all works about the transportome, or transportome-related.
- 📕 Handbook, the TCP-Lab handbook of useful things.
- 🧬 BioTEA and BioTEA-box, the DEA runners.
- 🧰 r4tcpl, a collection of utility R functions.
- 🧮 DeNumerator, an R package to enumerate the categories of DEGs in a factorial design.
- 🔎 compare_ranks, an R package to compare the order of two sorted lists.
- ⚖ Code of Conduct, TCP Lab's code of conduct for projects.
Federico Alessandro Ruffinatti
