v2.8 (#110)

TLCFEM · Jan 20, 2023 · 07d3957 · 07d3957
1 parent cec7887
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diff --git a/.github/.codecov.yml b/.github/.codecov.yml
@@ -1,7 +1,14 @@
 coverage:
-  range: 70..80
+  range: 80..90
   round: up
   precision: 4
+parsers:
+  gcov:
+    branch_detection:
+      conditional: no
+      loop: no
+      method: no
+      macro: no
 ignore:
   - "**/*Parser.cpp"
   - "Developer"
@@ -16,3 +23,5 @@ ignore:
   - "Toolbox/mumps-src"
   - "Toolbox/superlu-src"
   - "Toolbox/superlumt-src"
+  - "Toolbox/argument.cpp"
+  - "Toolbox/command.cpp"
diff --git a/.github/ISSUE_TEMPLATE/application_execution.md b/.github/ISSUE_TEMPLATE/application_execution.md
@@ -0,0 +1,18 @@
+---
+name: Application Execution
+about: Create a report to help us improve
+title: "[Portability]"
+labels: 'portability'
+assignees: ''
+
+---
+
+***The application officially distributed requires AVX support. Please make sure your CPU supports AVX.***
+
+***If possible, please try to compile the application locally first to see if it executes.***
+
+**Platform**
+Please provide platform information, including OS, CPU.
+
+**Issue**
+Please provide a screenshot, etc., that shows the failed execution of the application.
diff --git a/.github/ISSUE_TEMPLATE/bug_report.md b/.github/ISSUE_TEMPLATE/bug_report.md
@@ -1,20 +1,20 @@
 ---
-name: Bug report
+name: Bug Report
 about: Create a report to help us improve
 title: "[BUG]"
-labels: ''
+labels: 'bug'
 assignees: ''
 
 ---
 
 **Describe the bug**
 A clear and concise description of what the bug is.
 
-**Expected behavior**
-A clear and concise description of the expected result should be.
+**Expected behaviour**
+A clear and concise description of the expected result should be. It would be even better if there is a theoretical solution or reference.
 
-**To Reproduce**
-Please provide a MWE.
+**To reproduce**
+Please provide a MWE (minimum working example) model. It shall be as simple as possible to help efficiently identify the problem.
 
 **Additional context**
 Add any other context about the problem here. If there are any references, please also provide them.
diff --git a/.github/ISSUE_TEMPLATE/feature_request.md b/.github/ISSUE_TEMPLATE/feature_request.md
@@ -1,8 +1,8 @@
 ---
-name: Feature request
+name: Feature Request
 about: Suggest an idea for this project
 title: "[FEATURE]"
-labels: ''
+labels: 'feature'
 assignees: ''
 
 ---

diff --git a/.github/workflows/dev-mkl-vtk.yml b/.github/workflows/dev-mkl-vtk.yml
@@ -14,8 +14,8 @@ jobs:
         run: |
           wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null
           echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
-          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.2-linux.tar.gz
-          tar xf VTK-9.2.2-linux.tar.gz
+          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.5-linux.tar.gz
+          tar xf VTK-9.2.5-linux.tar.gz
       - name: Golang
         uses: actions/setup-go@v3
       - name: Compile
@@ -32,11 +32,11 @@ jobs:
           ./suanPan-linux-mkl-vtk/bin/suanPan -v
       - uses: actions/upload-artifact@v3
         with:
-          name: suanPan-2.7.0-1.x86_64.deb
-          path: suanPan-2.7.0-1.x86_64.deb
+          name: suanPan-2.8.0-1.x86_64.deb
+          path: suanPan-2.8.0-1.x86_64.deb
   fedora-mkl-vtk-dev:
     runs-on: ubuntu-22.04
-    container: fedora:35
+    container: fedora:36
     steps:
       - name: Setup
         run: |
@@ -57,19 +57,19 @@ jobs:
         uses: actions/checkout@v3
       - name: Install MKL VTK
         run: |
-          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.2-linux.tar.gz
-          tar xf VTK-9.2.2-linux.tar.gz
+          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.5-linux.tar.gz
+          tar xf VTK-9.2.5-linux.tar.gz
       - name: Compile
         run: |
           source /opt/intel/oneapi/setvars.sh
           cmake -DCMAKE_C_COMPILER=icx -DCMAKE_CXX_COMPILER=icx -DCMAKE_Fortran_COMPILER=ifx -DCMAKE_BUILD_TYPE=Release -DBUILD_MULTITHREAD=ON -DUSE_HDF5=ON -DUSE_EXTERNAL_VTK=ON -DVTK_DIR=./lib/cmake/vtk-9.2/ -DUSE_MKL=ON -DMKLROOT=/opt/intel/oneapi/mkl/latest/ -DLINK_DYNAMIC_MKL=OFF .
           make package -j"$(nproc)"
       - name: Test
         run: |
-          dnf install ./suanPan-2.7.0-1.x86_64.rpm -y
+          dnf install ./suanPan-2.8.0-1.x86_64.rpm -y
           suanPan -v
       - name: Upload
         uses: actions/upload-artifact@v3
         with:
-          name: suanPan-2.7.0-1.x86_64.rpm
-          path: suanPan-2.7.0-1.x86_64.rpm
+          name: suanPan-2.8.0-1.x86_64.rpm
+          path: suanPan-2.8.0-1.x86_64.rpm
diff --git a/.github/workflows/dev-vtk.yml b/.github/workflows/dev-vtk.yml
@@ -12,8 +12,8 @@ jobs:
         uses: actions/checkout@v3
       - name: Install VTK
         run: |
-          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.2-linux.tar.gz
-          tar xf VTK-9.2.2-linux.tar.gz
+          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.5-linux.tar.gz
+          tar xf VTK-9.2.5-linux.tar.gz
       - name: Golang
         uses: actions/setup-go@v3
       - name: Compile
@@ -29,24 +29,24 @@ jobs:
           ./suanPan-linux-openblas-vtk/bin/suanPan -v
       - uses: actions/upload-artifact@v3
         with:
-          name: suanPan-2.7.0-1.x86_64.deb
-          path: suanPan-2.7.0-1.x86_64.deb
+          name: suanPan-2.8.0-1.x86_64.deb
+          path: suanPan-2.8.0-1.x86_64.deb
   macos-openblas-vtk-dev:
     runs-on: macos-11
     steps:
       - name: Clone
         uses: actions/checkout@v3
       - name: Install VTK
         run: |
-          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.2-macos.tar.gz
-          tar xf VTK-9.2.2-macos.tar.gz
+          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.5-macos.tar.gz
+          tar xf VTK-9.2.5-macos.tar.gz
       - name: Golang
         uses: actions/setup-go@v3
       - name: Compile
         run: |
-          export CC=$(brew --prefix llvm@14)/bin/clang && export CXX=$(brew --prefix llvm@14)/bin/clang++ && export FC=gfortran-10
+          export CC=$(brew --prefix llvm@15)/bin/clang && export CXX=$(brew --prefix llvm@15)/bin/clang++ && export FC=gfortran-11
           go build Checker/updater.go
-          brew install llvm glfw glew libomp
+          brew install glfw glew libomp
           cmake -DCMAKE_BUILD_TYPE=Debug -DBUILD_MULTITHREAD=ON -DUSE_HDF5=ON -DUSE_EXTERNAL_VTK=ON -DVTK_DIR=./lib/cmake/vtk-9.2/ -DCMAKE_INSTALL_PREFIX=suanPan-macos-openblas-vtk .
           make install -j4
       - name: Test
@@ -60,15 +60,15 @@ jobs:
         uses: actions/checkout@v3
       - name: Install VTK
         run: |
-          C:/msys64/usr/bin/wget.exe https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.2-win.7z
-          7z x VTK-9.2.2-win.7z
+          C:/msys64/usr/bin/wget.exe https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.5-win.7z
+          7z x VTK-9.2.5-win.7z
       - name: Golang
         uses: actions/setup-go@v3
       - name: Compile
         run: |
           go build Checker/updater.go
           cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_MULTITHREAD=ON -DUSE_HDF5=ON -DUSE_EXTERNAL_VTK=ON -DVTK_DIR=D:/a/suanPan/suanPan/lib/cmake/vtk-9.2/ -DCMAKE_INSTALL_PREFIX=suanPan-win-openblas-vtk .
-          cmake --build . --target INSTALL --config Release
+          cmake --build . --target INSTALL --config Release -j 4
       - name: Pack
         run: |
           cp updater.exe suanPan-win-openblas-vtk/bin

diff --git a/.github/workflows/dev.yml b/.github/workflows/dev.yml
@@ -35,9 +35,10 @@ jobs:
         uses: actions/setup-go@v3
       - name: Compile
         run: |
-          export CC=gcc-10 && export CXX=g++-10 && export FC=gfortran-10
+          export CC=gcc-11 && export CXX=g++-11 && export FC=gfortran-11
           go build Checker/updater.go
           brew install libomp
           cmake -DCMAKE_BUILD_TYPE=Debug -DUSE_HDF5=ON .
           make -j4
+          export DYLD_LIBRARY_PATH=Libs/mac/
           ./suanPan -v
diff --git a/.github/workflows/master-mkl-vtk.yml b/.github/workflows/master-mkl-vtk.yml
@@ -15,8 +15,8 @@ jobs:
           echo "SP_TIME=daily-$(date +''%Y%m%d%H'')" >> $GITHUB_ENV
           wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null
           echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
-          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.2-linux.tar.gz
-          tar xf VTK-9.2.2-linux.tar.gz
+          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.5-linux.tar.gz
+          tar xf VTK-9.2.5-linux.tar.gz
       - name: Golang
         uses: actions/setup-go@v3
       - name: Compile
@@ -32,7 +32,7 @@ jobs:
           tar czf suanPan-linux-mkl-vtk.tar.gz suanPan-linux-mkl-vtk
       - name: Test
         run: |
-          sudo apt-get install ./suanPan-2.7.0-1.x86_64.deb -y
+          sudo apt-get install ./suanPan-2.8.0-1.x86_64.deb -y
           suanPan -v
           export LD_LIBRARY_PATH=/home/runner/work/suanPan/suanPan/suanPan-linux-mkl-vtk/lib
           cd suanPan-linux-mkl-vtk/bin
@@ -50,14 +50,14 @@ jobs:
         uses: svenstaro/upload-release-action@v2
         with:
           repo_token: ${{ secrets.GITHUB_TOKEN }}
-          file: suanPan-2.7.0-1.x86_64.deb
-          asset_name: suanPan-2.7.0-1.x86_64.deb
+          file: suanPan-2.8.0-1.x86_64.deb
+          asset_name: suanPan-2.8.0-1.x86_64.deb
           tag: ${{ env.SP_TIME }}
           prerelease: true
           overwrite: true
   fedora-mkl-vtk:
     runs-on: ubuntu-22.04
-    container: fedora:35
+    container: fedora:36
     steps:
       - name: Setup
         run: |
@@ -79,22 +79,22 @@ jobs:
         uses: actions/checkout@v3
       - name: Install MKL VTK
         run: |
-          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.2-linux.tar.gz
-          tar xf VTK-9.2.2-linux.tar.gz
+          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.5-linux.tar.gz
+          tar xf VTK-9.2.5-linux.tar.gz
       - name: Compile
         run: |
           cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_MULTITHREAD=ON -DUSE_HDF5=ON -DUSE_EXTERNAL_VTK=ON -DVTK_DIR=./lib/cmake/vtk-9.2/ -DUSE_MKL=ON -DMKLROOT=/opt/intel/oneapi/mkl/latest/ -DUSE_INTEL_OPENMP=OFF -DLINK_DYNAMIC_MKL=OFF .
           make package -j"$(nproc)"
       - name: Test
         run: |
-          dnf install ./suanPan-2.7.0-1.x86_64.rpm -y
+          dnf install ./suanPan-2.8.0-1.x86_64.rpm -y
           suanPan -v
       - name: RPM
         uses: svenstaro/upload-release-action@v2
         with:
           repo_token: ${{ secrets.GITHUB_TOKEN }}
-          file: suanPan-2.7.0-1.x86_64.rpm
-          asset_name: suanPan-2.7.0-1.x86_64.rpm
+          file: suanPan-2.8.0-1.x86_64.rpm
+          asset_name: suanPan-2.8.0-1.x86_64.rpm
           tag: ${{ env.SP_TIME }}
           prerelease: true
           overwrite: true
diff --git a/.github/workflows/master-vtk.yml b/.github/workflows/master-vtk.yml
@@ -13,8 +13,8 @@ jobs:
       - name: Install VTK
         run: |
           echo "SP_TIME=daily-$(date +''%Y%m%d%H'')" >> $GITHUB_ENV
-          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.2-linux.tar.gz
-          tar xf VTK-9.2.2-linux.tar.gz
+          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.5-linux.tar.gz
+          tar xf VTK-9.2.5-linux.tar.gz
       - name: Golang
         uses: actions/setup-go@v3
       - name: Compile
@@ -46,15 +46,15 @@ jobs:
       - name: Install VTK
         run: |
           echo "SP_TIME=daily-$(date +''%Y%m%d%H'')" >> $GITHUB_ENV
-          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.2-macos.tar.gz
-          tar xf VTK-9.2.2-macos.tar.gz
+          wget https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.5-macos.tar.gz
+          tar xf VTK-9.2.5-macos.tar.gz
       - name: Golang
         uses: actions/setup-go@v3
       - name: Compile
         run: |
-          export CC=$(brew --prefix llvm@14)/bin/clang && export CXX=$(brew --prefix llvm@14)/bin/clang++ && export FC=gfortran-10
+          export CC=$(brew --prefix llvm@15)/bin/clang && export CXX=$(brew --prefix llvm@15)/bin/clang++ && export FC=gfortran-11
           go build Checker/updater.go
-          brew install llvm glfw glew libomp
+          brew install glfw glew libomp
           cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_MULTITHREAD=ON -DUSE_HDF5=ON -DUSE_EXTERNAL_VTK=ON -DVTK_DIR=./lib/cmake/vtk-9.2/ -DCMAKE_INSTALL_PREFIX=suanPan-macos-openblas-vtk .
           make install -j4
       - name: Pack
@@ -81,8 +81,8 @@ jobs:
       - name: Install VTK
         run: |
           echo ("SP_TIME=daily-"+(get-date -format "yyyyMMddHH")) >> $env:GITHUB_ENV
-          C:/msys64/usr/bin/wget.exe https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.2-win.7z
-          7z x VTK-9.2.2-win.7z
+          C:/msys64/usr/bin/wget.exe https://github.com/TLCFEM/prebuilds/releases/download/latest/VTK-9.2.5-win.7z
+          7z x VTK-9.2.5-win.7z
       - name: Golang
         uses: actions/setup-go@v3
       - name: Compile

diff --git a/.github/workflows/master.yml b/.github/workflows/master.yml
@@ -42,7 +42,7 @@ jobs:
         uses: actions/setup-go@v3
       - name: Compile
         run: |
-          export CC=gcc-10 && export CXX=g++-10 && export FC=gfortran-10
+          export CC=gcc-11 && export CXX=g++-11 && export FC=gfortran-11
           go build Checker/updater.go
           echo "SP_TIME=daily-$(date +''%Y%m%d%H'')" >> $GITHUB_ENV
           cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_MULTITHREAD=ON -DUSE_HDF5=ON -DCMAKE_INSTALL_PREFIX=suanPan-macos-openblas .

diff --git a/.gitignore b/.gitignore
@@ -20,6 +20,7 @@ $RECYCLE.BIN/
 /.vscode/*
 /build/*
 /Checker/.idea/*
+/Checker/*.exe
 /cmake-build*/*
 /Document/*
 /MSVC/Debug/*

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,16 +3,29 @@
 ## known issues
 
 1. `MKL` includes outdated `FEAST`, the external names in `FEAST` library are modified to avoid linking error.
-2. `OpenBLAS` causes SEGFAULT with version 0.3.15+ when compiled with `DYNAMIC_ARCH` enabled.
+
+## version 2.8
+
+1. better on screen display with the fmt library [#99](https://github.com/TLCFEM/suanPan/pull/99)
+2. add command `overview`
+3. update `OpenBLAS` to version `0.3.21`
+4. add Euler buckling load check for `T2D2` [#104](https://github.com/TLCFEM/suanPan/pull/104)
+5. speed-up analysis with visualisation recorder [#102](https://github.com/TLCFEM/suanPan/pull/102)
+6. update `VTK` to version `9.2.5`
+7. add `Expression` to support custom function definition [#105](https://github.com/TLCFEM/suanPan/pull/105)
+8. add `CustomMises1D`, `CustomCC`, `CustomCDP`, `CustomDP`, `CustomJ2` and `CustomHoffman` models
 
 ## version 2.7
 
 1. optimise assembling of symmetric global matrices [#79](https://github.com/TLCFEM/suanPan/pull/79)
-2. extend `BatheTwoStep` to allow customisation of spectral radius [#81](https://github.com/TLCFEM/suanPan/pull/81) and sub-step size [#82](https://github.com/TLCFEM/suanPan/pull/82)
+2. extend `BatheTwoStep` to allow customisation of spectral radius [#81](https://github.com/TLCFEM/suanPan/pull/81) and
+   sub-step size [#82](https://github.com/TLCFEM/suanPan/pull/82)
 3. update `Catch2` to version `2.13.10`
 4. update `Armadillo` to version `11.4`
 5. update modern `Arpack` [#94](https://github.com/TLCFEM/suanPan/pull/94)
-6. add `Tchamwa` [#88](https://github.com/TLCFEM/suanPan/pull/88), `BatheExplicit` [#90](https://github.com/TLCFEM/suanPan/pull/90) and `GeneralisedAlphaExplicit` [#93](https://github.com/TLCFEM/suanPan/pull/93) explicit time integration methods
+6. add `Tchamwa` [#88](https://github.com/TLCFEM/suanPan/pull/88),
+   `BatheExplicit` [#90](https://github.com/TLCFEM/suanPan/pull/90)
+   and `GeneralisedAlphaExplicit` [#93](https://github.com/TLCFEM/suanPan/pull/93) explicit time integration methods
 7. add `OALTS` two-step implicit time integration method [#92](https://github.com/TLCFEM/suanPan/pull/92)
 8. add `Sinh1D` and `Tanh1D` nonlinear elastic 1D material
 9. add `linear_system` flag to speed up linear system analysis

diff --git a/CITATION.cff b/CITATION.cff
@@ -28,5 +28,5 @@ keywords:
   - IGA
   - Solid Mechanics
 license: GPL-3.0
-version: '2.6.1'
-date-released: '2022-11-09'
+version: '2.7'
+date-released: '2022-12-21'