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@Tec-BASE-Laboratory

Tec BASE

Laboratorio Nacional de Secuenciación Genómica Tec BASE

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  1. Metagenomica Metagenomica Public

    En este repositorio se presenta un código de R para poder hacer un análisis de datos Metagenómicos a partir de datos arrojados por un análisis taxonómico del programa KRAKEN 2

    R 1 2

  2. docking-analysis docking-analysis Public

    This repository holds series of code which can be used to perform analysis of dockings obtained from cluspro. The main goal is to extract the non-bond interactions of each docking to have more feat…

    Python 1

  3. Pipeline_Transcriptomics Pipeline_Transcriptomics Public

    R 1

  4. Bioinformatics_Tutorials Bioinformatics_Tutorials Public

    El propósito de este repositorio es proveer una descripción del proceso para instalar las herramientas básicas de bioinformática en dispositivos: Linux, Mac y Windows.

  5. CIRCOSPLOT CIRCOSPLOT Public

    CircosPlot for data filtered and selected using BASH, and visualized in Bedgraph using R coding.

    R

  6. maftools-in-R maftools-in-R Public

    maftools is a bioinformatic package use to annotate mutations and find variants.

    R

Repositories

Showing 10 of 10 repositories
  • MAKER_Chippurus Public

    Full description of commands used for annotate de Mahi mahi genome, with SNAP and AUGUSTUS

    Tec-BASE-Laboratory/MAKER_Chippurus’s past year of commit activity
    Shell 0 0 0 0 Updated Sep 30, 2024
  • Variant-Calling Public

    Scripts for Exome and Genome with a reference

    Tec-BASE-Laboratory/Variant-Calling’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 9, 2024
  • docking-analysis Public

    This repository holds series of code which can be used to perform analysis of dockings obtained from cluspro. The main goal is to extract the non-bond interactions of each docking to have more features that can increase resolution while filtering results.

    Tec-BASE-Laboratory/docking-analysis’s past year of commit activity
    Python 1 0 0 1 Updated Dec 29, 2023
  • Metagenomica Public

    En este repositorio se presenta un código de R para poder hacer un análisis de datos Metagenómicos a partir de datos arrojados por un análisis taxonómico del programa KRAKEN 2

    Tec-BASE-Laboratory/Metagenomica’s past year of commit activity
    R 1 2 0 0 Updated Dec 12, 2023
  • PopGenANGSD Public

    Scripts en Bash para hacer análisis de Genómica poblacional utilizando ANGSD

    Tec-BASE-Laboratory/PopGenANGSD’s past year of commit activity
    Shell 0 0 0 0 Updated May 17, 2023
  • DGE-Analysis Public

    Differential Gene Expression (DGE) Analysis with DESeq2 using a reference genome

    Tec-BASE-Laboratory/DGE-Analysis’s past year of commit activity
    R 0 0 0 0 Updated Feb 25, 2023
  • maftools-in-R Public

    maftools is a bioinformatic package use to annotate mutations and find variants.

    Tec-BASE-Laboratory/maftools-in-R’s past year of commit activity
    R 0 0 0 0 Updated Feb 24, 2023
  • CIRCOSPLOT Public

    CircosPlot for data filtered and selected using BASH, and visualized in Bedgraph using R coding.

    Tec-BASE-Laboratory/CIRCOSPLOT’s past year of commit activity
    R 0 0 0 0 Updated Feb 22, 2023
  • Pipeline_Transcriptomics Public
    Tec-BASE-Laboratory/Pipeline_Transcriptomics’s past year of commit activity
    R 0 1 0 0 Updated Nov 18, 2021
  • Bioinformatics_Tutorials Public

    El propósito de este repositorio es proveer una descripción del proceso para instalar las herramientas básicas de bioinformática en dispositivos: Linux, Mac y Windows.

    Tec-BASE-Laboratory/Bioinformatics_Tutorials’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Sep 17, 2021

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