G3-274: Update annotator get_ncbo_link function to use requests #21
Workflow file for this run
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| name: Pull Request Test, Build and Deploy | |
| on: | |
| pull_request: | |
| branches: | |
| - 'main' | |
| jobs: | |
| # TODO: Uncomment the following lines when we have | |
| # - Formatting | |
| # - Linting | |
| # - Tests | |
| # | |
| # format-lint: | |
| # name: "Format and Lint" | |
| # uses: ./.github/workflows/_format-lint-action.yml | |
| # with: | |
| # python-version: '3.9' | |
| # check-coverage: | |
| # name: "Check Coverage" | |
| # needs: [format-lint] | |
| # secrets: inherit | |
| # uses: ./.github/workflows/_check-coverage-action.yml | |
| # permissions: | |
| # pull-requests: write | |
| # with: | |
| # required-coverage: ${{ vars.REQUIRED_COVERAGE }} | |
| # coverage-module: "geneweaver.api" | |
| # test: | |
| # name: "Run Tests" | |
| # needs: [format-lint] | |
| # strategy: | |
| # matrix: | |
| # os: [ubuntu-latest] | |
| # python-version: ['3.10', '3.11'] | |
| # uses: ./.github/workflows/_run-tests-action.yml | |
| # with: | |
| # runner-os: ${{ matrix.os }} | |
| # python-version: ${{ matrix.python-version }} | |
| # required-coverage: ${{ vars.REQUIRED_COVERAGE }} | |
| build: | |
| name: "Build: Dev" | |
| # TODO: Uncomment the following lines when we have the previous steps | |
| # needs: [test, check-coverage] | |
| uses: ./.github/workflows/_skaffold-build-k8s.yml | |
| secrets: inherit | |
| with: | |
| default_image_repo: "us-east1-docker.pkg.dev/jax-cs-registry/docker-test/geneweaver" | |
| deploy: | |
| name: "Deploy: Dev" | |
| needs: [build] | |
| uses: ./.github/workflows/_skaffold-deploy-k8s.yml | |
| secrets: inherit | |
| with: | |
| environment: "jax-cluster-dev-10--dev" |