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Addressing Brent's comments and first try to fix CI Analysis errors #3622

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Addressing Brent's comments and first try to fix CI Analysis errors

Addressing Brent's comments and first try to fix CI Analysis errors #3622

Workflow file for this run

.github/workflows/main.yml at f71c9cb
name: CI
on:
push:
schedule:
- cron: '0 1 * * *' # Test every day at 1AM
jobs:
# Based on https://github.com/py-actions/flake8#quick-start
flake8-lint:
runs-on: ubuntu-latest
name: Lint
steps:
- name: Check out source repository
uses: actions/checkout@v3
- name: Set up Python environment
uses: actions/setup-python@v4
- name: flake8 Lint
uses: py-actions/flake8@v2
with:
ignore: "E116,E201,E202,E203,E211,E221,E222,E226,E225,E227,E228,E231,E241,E251,E261,E262,E265,E266,E271,E272,E301,E302,E303,E305,E402,F403,F405,E501,W504,E701,E702,E711,E713,E714,E722,E731,E741,F841,W391,W605"
# E116 unexpected indentation (comment)
# E201 whitespace after '('
# E202 whitespace before ')'
# E203 whitespace before ':'
# E211 whitespace before '['
# E221 multiple spaces before operator
# E222 multiple spaces after operator
# E225 missing whitespace around operator
# E226 missing whitespace around arithmetic operator
# E227 missing whitespace around bitwise or shift operator
# E228 missing whitespace around modulo operator
# E231 missing whitespace after ','
# E241 multiple spaces after ','
# E251 unexpected spaces around keyword / parameter equals
# E261 at least two spaces before inline comment
# E262 inline comment should start with '# '
# E265 block comment should start with '# '
# E266 too many leading '#' for block comment
# E271 multiple spaces after keyword
# E272 multiple spaces before keyword
# E301 expected 1 blank line, found 0
# E302 expected 2 blank lines, found 1
# E303 too many blank lines (3)
# E305 expected 2 blank lines after class or function definition, found 1
# E402 module level import not at top of file
# F403 unable to detect undefined names
# F405 may be undefined, or defined from star imports
# E501 line too long
# W504 line break after binary operator
# E701 multiple statements on one line (colon)
# E702 multiple statements on one line
# E711 comparison to None should be 'if cond is not None:'
# E713 test for membership should be 'not in'
# E714 test for object identity should be 'is not'
# E722 do not use bare 'except'
# E731 do not assign a lambda expression, use a def
# E741 ambiguous variable name
# F841 local variable is assigned to but never used
# W391 blank line at end of file
# W605 invalid escape sequence '\s'
Full_Analysis:
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v2
- name: Add conda to system path
run: |
echo $CONDA/bin >> $GITHUB_PATH
- name: Set Swap Space
uses: pierotofy/set-swap-space@49819abfb41bd9b44fb781159c033dba90353a7c
with:
swap-size-gb: 10
- name: Create conda env and install dependencies
run: |
conda config --set channel_priority strict
conda config --add channels conda-forge
conda env create -f environment.yml -n coffea-env
conda list -n coffea-env
- name: Install local pip packages
run: |
mkdir dir_for_topcoffea
cd dir_for_topcoffea
git clone https://github.com/TopEFT/topcoffea.git
cd topcoffea
conda run -n coffea-env pip install -e .
cd ../..
conda run -n coffea-env pip install -e .
- name: Conda list
run: |
conda list -n coffea-env
- name: Install pip packages
run: |
conda run -n coffea-env pip install xgboost
conda run -n coffea-env pip install mt2
conda list -n coffea-env
- name: Download root files
run: |
wget --no-verbose http://www.crc.nd.edu/~kmohrman/files/root_files/for_ci/ttHJet_UL17_R1B14_NAOD-00000_10194_NDSkim.root
- name: Pytest setup
run: |
conda install -y -n coffea-env -c conda-forge pytest pytest-cov root_base
mkdir histos
- name: Test make 1d quad plots
run: |
conda run -n coffea-env pytest --cov=./ --cov-report=xml -rP --cov-append tests/test_make_1d_quad_plots.py
- name: Run topeft processors over test files with futures executor
run: |
conda run -n coffea-env pytest --cov=./ --cov-report=xml -rP --cov-append tests/test_futures.py
- name: Get topeft yields
run: |
conda run -n coffea-env pytest --cov=./ --cov-report=xml -rP --cov-append -k test_make_yields_after_processor
- name: Compare topeft yields
run: |
conda run -n coffea-env pytest --cov=./ --cov-report=xml -rP --cov-append -k test_compare_yields_after_processor
- name: Run topeft processors over test files with workqueue executor
run: |
conda run -n coffea-env pytest --cov=./ --cov-report=xml -rP --cov-append tests/test_workqueue.py
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v2
with:
token: ${{ secrets.CODECOV_TOKEN }}
directory: ./coverage/reports/
env_vars: OS,PYTHON
fail_ci_if_error: true
files: ./coverage.xml
flags: unittests
name: codecov-umbrella
verbose: true