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| name: Test and deploy | |
| on: [ push, pull_request ] | |
| env: | |
| # Version required to run itwêwina: | |
| ACTIONS_PYTHON_VERSION: 3.9 | |
| # Version required to run npm build: | |
| ACTIONS_NODE_VERSION: 14 | |
| jobs: | |
| # Skips deploy if [skip deploy] is present in the commit message | |
| should-deploy: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| should-run: ${{ steps.ci-skip.outputs.ci-skip-not }} | |
| if: github.repository_owner == 'UAlbertaALTLab' && github.ref == 'refs/heads/main' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| # ci-skip needs to do a partial checkout | |
| fetch-depth: '0' | |
| - id: ci-skip | |
| uses: mstachniuk/ci-skip@v1 | |
| with: | |
| commit-filter: '[skip deploy]' | |
| # Run Pytest unit tests | |
| unit-test: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: 🐍 Set up Python ${{ env.ACTIONS_PYTHON_VERSION }} | |
| uses: actions/setup-python@v2 | |
| # actions/cache below uses this id to get the exact python version | |
| id: setup-python | |
| with: | |
| python-version: ${{ env.ACTIONS_PYTHON_VERSION }} | |
| - name: 🖥 Install system dependencies | |
| run: sudo apt-get install -y libfoma0 | |
| - name: ☤ Install pipenv | |
| run: python3 -m pip install pipenv==2021.11.9 | |
| # This started out life as a copy-paste from | |
| # https://github.com/actions/cache/blob/main/examples.md#python---pipenv | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ~/.local/share/virtualenvs | |
| key: ${{ runner.os }}-python-${{ steps.setup-python.outputs.python-version }}-pipenv-${{ hashFiles('Pipfile.lock') }} | |
| - name: 📥 Install dependencies | |
| run: | | |
| pipenv install --dev | |
| # Install pytest plugin to show failed tests on the web | |
| pipenv run pip install pytest-github-actions-annotate-failures | |
| - name: Do LFS checkout | |
| # actions/checkout@v2 has a `with: lfs: true` option, but it only | |
| # knows how to talk to GitHub’s LFS server. | |
| # | |
| # These actions are automatic if you have run `git lfs install` | |
| # even once on your dev machine. | |
| run: git lfs install --local && git lfs fetch && git lfs checkout | |
| - name: 🧶 Run linters/static-analysis | |
| run: | | |
| pipenv run mypy src | |
| - name: 🩺 Run unit tests | |
| env: | |
| DEBUG: "True" | |
| run: pipenv run test -v --cov=src --cov-report=xml | |
| - name: Check working directory clean | |
| run: ./libexec/check-git-status | |
| - name: Check that generated files are up-to-date | |
| # A few auto-generated files are checked in for convenience; ensure | |
| # that they are up-to-date. | |
| run: "pipenv run docker/helper.py make-yaml | |
| && if ! ./libexec/check-git-status ; then | |
| echo Error: running make-yaml resulted in changed files. When | |
| changing template files, please ensure that updated generated | |
| files get checked in too. 1>&2 ; | |
| exit 1 ; | |
| fi" | |
| - name: 📤 Upload Codecov coverage report | |
| uses: codecov/codecov-action@v1.5.0 | |
| # Runs Cypress acceptance tests | |
| integration-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: 🐍 Set up Python ${{ env.ACTIONS_PYTHON_VERSION }} | |
| uses: actions/setup-python@v2 | |
| id: setup-python | |
| with: | |
| python-version: ${{ env.ACTIONS_PYTHON_VERSION }} | |
| - name: Setup Node ${{ env.ACTIONS_NODE_VERSION }} | |
| uses: actions/setup-node@v2 | |
| with: | |
| node-version: ${{ env.ACTIONS_NODE_VERSION }} | |
| cache: npm | |
| - name: 🖥 Install system dependencies | |
| run: sudo apt-get install -y libfoma0 libgtk2.0-0 libgtk-3-0 libgbm-dev libnotify-dev libgconf-2-4 libnss3 libxss1 libasound2 libxtst6 xauth xvfb | |
| - name: ☤ Install pipenv | |
| run: python3 -m pip install pipenv==2021.11.9 | |
| # This started out life as a copy-paste from | |
| # https://github.com/actions/cache/blob/main/examples.md#python---pipenv | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ~/.local/share/virtualenvs | |
| key: ${{ runner.os }}-python-${{ steps.setup-python.outputs.python-version }}-pipenv-${{ hashFiles('Pipfile.lock') }} | |
| - name: 📥 Install Python dependencies | |
| run: | | |
| pipenv install --dev | |
| - name: Do LFS checkout | |
| # actions/checkout@v2 has a `with: lfs: true` option, but it only | |
| # knows how to talk to GitHub’s LFS server. | |
| # | |
| # These actions are automatic if you have run `git lfs install` | |
| # even once on your dev machine. | |
| run: git lfs install --local && git lfs fetch && git lfs checkout | |
| - name: 📥 Install Node dependencies | |
| run: npm ci | |
| - name: 🛑 Halt tests if Cypress tests are marked as '.only' | |
| run: npm run stop-only | |
| - name: 🏗 Build frontend | |
| run: npm run build | |
| - name: 🌲 Run Cypress tests | |
| env: | |
| DEBUG: "True" | |
| # NOTE: only set on the upstream repo, i.e., UAlbertaALTLab/morphodict | |
| CYPRESS_RECORD_KEY: "${{ secrets.CYPRESS_RECORD_KEY }}" | |
| run: | | |
| # Enables uploading test runs to Cypress Dashboard: | |
| if [ -n "$CYPRESS_RECORD_KEY" ] ; then export CYPRESS_OPTS="--key $CYPRESS_RECORD_KEY" ; fi | |
| pipenv run ./scripts/run-cypress --no-interactive | |
| - name: Archive cypress videos | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: cypress-videos | |
| path: | | |
| cypress/videos | |
| build-docker-image: | |
| runs-on: ubuntu-latest | |
| # Only build the Docker Image when we're deploying! | |
| needs: | |
| - should-deploy | |
| if: needs.should-deploy.outputs.should-run == 'true' | |
| steps: | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GHCR_PERSONAL_ACCESS_TOKEN }} | |
| - uses: actions/checkout@v2 | |
| - name: Build and push Docker images | |
| uses: docker/build-push-action@v2 | |
| with: | |
| # build-push-action with the default ‘git context’ ignores the | |
| # .dockerignore file | |
| # https://github.com/docker/build-push-action/issues/182 | |
| context: . | |
| file: docker/Dockerfile | |
| push: true | |
| # hopefully this will speed up builds and save disk space by | |
| # sharing layers with the existing docker image, where possible | |
| cache-from: | | |
| type=registry,ref=ghcr.io/ualbertaaltlab/itwewina.altlab.app:latest | |
| tags: | | |
| ghcr.io/ualbertaaltlab/itwewina.altlab.app:${{ github.sha }} | |
| trigger-deployment: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - should-deploy | |
| - unit-test | |
| - integration-test | |
| - build-docker-image | |
| if: needs.should-deploy.outputs.should-run == 'true' | |
| steps: | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GHCR_PERSONAL_ACCESS_TOKEN }} | |
| - uses: actions/checkout@v2 | |
| - name: 🐍 Set up Python ${{ env.ACTIONS_PYTHON_VERSION }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ env.ACTIONS_PYTHON_VERSION }} | |
| - name: Install requests | |
| run: pip install requests | |
| - name: Update tag | |
| run: docker/copy-registry-tag ${{ github.sha }} latest | |
| env: | |
| GHCR_PERSONAL_ACCESS_TOKEN: ${{ secrets.GHCR_PERSONAL_ACCESS_TOKEN }} | |
| - name: send HTTP request to deploy.altlab.dev webhook | |
| # Be careful with spacing here. | |
| # | |
| # What https://yaml-multiline.info *doesn’t* warn you about: although | |
| # `>-` means “replace newlines with spaces,” if you have an extra | |
| # space on the next line, the newline gets preserved! | |
| # | |
| # So although | |
| # | |
| # foo: >- | |
| # a | |
| # a | |
| # | |
| # means `{ "foo": "a a" }`, | |
| # | |
| # foo: >- | |
| # a | |
| # a | |
| # | |
| # turns into `{ "foo": "a\n a" }` ! | |
| run: >- | |
| curl -X POST https://deploy.altlab.dev/itwewina --fail | |
| -d '{ "secret": "${{ secrets.DEPLOY_ALTLAB_DEV_ITWEWINA_KEY }}" }' | |
| -H 'Content-Type: application/json' |