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d-morrison committed Jul 10, 2024
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2 changes: 1 addition & 1 deletion R/est.incidence.R
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#' This function models seroincidence using maximum likelihood estimation; that is, it finds the value of the seroincidence parameter which maximizes the likelihood (i.e., joint probability) of the data.
#' @inheritParams log_likelihood
#' @inheritParams stats::nlm
#' @param pop_data [data.frame()] with cross-sectional serology data per antibody and age, and additional columns
#' @param pop_data [data.frame] with cross-sectional serology data per antibody and age, and additional columns
#' @param lambda_start starting guess for incidence rate, in years/event.
#' @param antigen_isos Character vector with one or more antibody names. Values must match `pop_data`
#' @param build_graph whether to graph the log-likelihood function across a range of incidence rates (lambda values)
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