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@UMEssen

University Medicine Essen

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  1. SALT SALT Public

    Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.

    Python 77 6

  2. FHIR-PYrate FHIR-PYrate Public

    FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter reso…

    Python 58 11

  3. saros-dataset saros-dataset Public

    Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data

    Python 36 7

  4. Body-and-Organ-Analysis Body-and-Organ-Analysis Public

    BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical …

    Python 26 7

  5. DICOM-RST DICOM-RST Public

    DICOMweb-compatible gateway server with DIMSE and S3 implementations

    Rust 17 2

  6. dicom-deidentifier-ts dicom-deidentifier-ts Public

    TypeScript 10

Repositories

Showing 10 of 14 repositories
  • DeidentiFHIR-Pipeline Public

    With the DeidentiFHIR-Pipeline, you can transfer FHIR based data from one source (e.g. a FHIR server) to a target (e.g. a FHIR server) and pseudonymize the data in between. Pseudonymization is based on the DeidentiFHIR library.

    UMEssen/DeidentiFHIR-Pipeline’s past year of commit activity
    Java 1 MIT 0 1 4 Updated Dec 23, 2024
  • DICOM-RST Public

    DICOMweb-compatible gateway server with DIMSE and S3 implementations

    UMEssen/DICOM-RST’s past year of commit activity
    Rust 17 MIT 2 12 (1 issue needs help) 0 Updated Dec 20, 2024
  • dicom-deidentifier-ts Public
    UMEssen/dicom-deidentifier-ts’s past year of commit activity
    TypeScript 10 MIT 0 0 1 Updated Oct 24, 2024
  • DeidentiFHIR Public
    UMEssen/DeidentiFHIR’s past year of commit activity
    Scala 8 MIT 2 9 1 Updated Oct 8, 2024
  • Body-and-Organ-Analysis Public

    BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical images and identifying the different structures within the human body, including bones, muscles, organs, and blood vessels.

    UMEssen/Body-and-Organ-Analysis’s past year of commit activity
    Python 26 Apache-2.0 7 3 2 Updated Oct 4, 2024
  • FHIR-PYrate Public

    FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.

    UMEssen/FHIR-PYrate’s past year of commit activity
    Python 58 MIT 11 11 4 Updated Oct 4, 2024
  • saros-dataset Public

    Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data

    UMEssen/saros-dataset’s past year of commit activity
    Python 36 MIT 7 0 1 Updated Oct 4, 2024
  • SALT Public

    Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.

    UMEssen/SALT’s past year of commit activity
    Python 77 MIT 6 1 1 Updated Oct 4, 2024
  • FHIR-Converter Public

    Thin wrapper around Microsoft FHIR Converter to allow for a standalone FHIR server that provides data conversion operations.

    UMEssen/FHIR-Converter’s past year of commit activity
    C# 0 MIT 1 0 0 Updated Jul 22, 2024
  • MM-WS-Scala Public

    A library that implements websocket functionality in Scala 2

    UMEssen/MM-WS-Scala’s past year of commit activity
    Scala 0 0 0 1 Updated Mar 28, 2024
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