Merge pull request #340 from kaklise/1.0

Minor update to the snap function and cleanup

.github/workflows/build_tests.yml

@@ -90,16 +90,16 @@ jobs:
       if: matrix.os == 'windows-latest'
       run: | # the following skips windows rst doctests that rely on geopandas (gis.rst and model_io.rst) because skipif is not working properly
         coverage erase
-        coverage run --context=${{ matrix.os }}.py${{ matrix.python-version }} --source=wntr --omit="*/tests/*" -m pytest  --doctest-modules --doctest-glob="*.rst" wntr
-        coverage run --context=${{ matrix.os }}.py${{ matrix.python-version }} --source=wntr --omit="*/tests/*" --append -m pytest --doctest-glob="*.rst" --ignore-glob="*model_io.rst" --ignore-glob="*gis.rst" documentation
+        coverage run --context=${{ matrix.os }}.py${{ matrix.python-version }} --source=wntr --omit="*/tests/*","*/sim/network_isolation/network_isolation.py","*/sim/aml/evaluator.py" -m pytest  --doctest-modules --doctest-glob="*.rst" wntr
+        coverage run --context=${{ matrix.os }}.py${{ matrix.python-version }} --source=wntr --omit="*/tests/*","*/sim/network_isolation/network_isolation.py","*/sim/aml/evaluator.py" --append -m pytest --doctest-glob="*.rst" --ignore-glob="*model_io.rst" --ignore-glob="*gis.rst" documentation
       env:
         COVERAGE_FILE: .coverage.${{ matrix.python-version }}.${{ matrix.os }}
     - name: Run Tests
       if: matrix.os != 'windows-latest'
       run: | 
         coverage erase
-        coverage run --context=${{ matrix.os }}.py${{ matrix.python-version }} --source=wntr --omit="*/tests/*" -m pytest  --doctest-modules --doctest-glob="*.rst" wntr
-        coverage run --context=${{ matrix.os }}.py${{ matrix.python-version }} --source=wntr --omit="*/tests/*" --append -m pytest --doctest-glob="*.rst" documentation
+        coverage run --context=${{ matrix.os }}.py${{ matrix.python-version }} --source=wntr --omit="*/tests/*","*/sim/network_isolation/network_isolation.py","*/sim/aml/evaluator.py" -m pytest  --doctest-modules --doctest-glob="*.rst" wntr
+        coverage run --context=${{ matrix.os }}.py${{ matrix.python-version }} --source=wntr --omit="*/tests/*","*/sim/network_isolation/network_isolation.py","*/sim/aml/evaluator.py" --append -m pytest --doctest-glob="*.rst" documentation
       env:
         COVERAGE_FILE: .coverage.${{ matrix.python-version }}.${{ matrix.os }}
 

.github/workflows/quick_check.yml

@@ -33,7 +33,7 @@ jobs:
         python -m pip install -e .
     - name: Run tests and coverage (unittests plus doctests)
       run: |
-        coverage run --source=wntr --omit="*/tests/*" -m pytest -m "not time_consuming" --doctest-modules --doctest-glob="*.rst" wntr        
+        coverage run --source=wntr --omit="*/tests/*","*/sim/network_isolation/network_isolation.py","*/sim/aml/evaluator.py" -m pytest -m "not time_consuming" --doctest-modules --doctest-glob="*.rst" wntr        
         coverage report --fail-under=70        
     # coverage run --source=wntr --omit="*/tests/*" --append -m pytest --doctest-glob="*.rst" documentation 
 

documentation/whatsnew.rst

@@ -1,9 +1,9 @@
 Release notes
 ================
 
-.. _whatsnew_060:
+.. _whatsnew_100:
 
-.. include:: whatsnew/v0.6.0.rst
+.. include:: whatsnew/v1.0.0.rst
 
 .. _whatsnew_050:
 

documentation/whatsnew/v0.6.0.rst → documentation/whatsnew/v1.0.0.rst

@@ -1,5 +1,19 @@
-v0.6.0 (main)
+v1.0.0 (March 30, 2023)
 ---------------------------------------------------
+WNTR version 1.0.0 has undergone extensive testing 
+with a wide range of water distribution system models
+and analysis options. The software has also successfully been
+used by external research groups and in analysis that uses large-scale 
+water distribution system models. See 
+`User community <https://wntr.readthedocs.io/en/latest/users.html>`_ 
+for a list of publications and software that uses WNTR.
+
+* Updated copyright and added EPANET license
+  `#336 <https://github.com/USEPA/WNTR/pull/336>`_.
+
+* Updated the setup process and documentation
+  `#335 <https://github.com/USEPA/WNTR/pull/335>`_.
+
 * Bug fix to allow for np.float and np.int in type checking 
   `#334 <https://github.com/USEPA/WNTR/pull/334>`_.
 

wntr/__init__.py

@@ -1,15 +1,3 @@
-# shapely and geopandas are optional dependencies of WNTR. If shapely 
-# version is >= 2.0, the environment variable USE_PYGEOS is set to '0' to 
-# ensure geopandas uses shapely over pygeos. Future versions of 
-# geopandas will use shapely by default.
-try:
-    import shapely
-    if int(shapely.__version__.split('.')[0]) >= 2:
-        import os
-        os.environ['USE_PYGEOS'] = '0'
-except ModuleNotFoundError:
-    pass
-
 from wntr import epanet
 from wntr import network
 from wntr import morph
@@ -20,7 +8,7 @@
 from wntr import gis
 from wntr import utils
 
-__version__ = '0.6.0dev'
+__version__ = '1.0.0'
 
 __copyright__ = """Copyright 2023 National Technology & Engineering 
 Solutions of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 

wntr/gis/geospatial.py

@@ -49,7 +49,7 @@ def snap(A, B, tolerance):
         
         If B contains Lines or MultiLineString, columns include:
             - link: closest Line in B to Point in A
-            - node: start or end node of Line in B that is closest to the snapped point
+            - node: start or end node of Line in B that is closest to the snapped point (if B contains columns "start_node_name" and "end_node_name")
             - snap_distance: distance between Point A and snapped point
             - line_position: normalized distance of snapped point along Line in B from the start node (0.0) and end node (1.0)
             - geometry: GeoPandas Point object of the snapped point
@@ -126,9 +126,12 @@ def snap(A, B, tolerance):
         snapped_points = gpd.GeoDataFrame(data=closest ,geometry=snapped_points, crs=crs)
         # determine whether the snapped point is closer to the start or end node
         snapped_points["line_position"] = closest.geometry.project(snapped_points, normalized=True)
-        snapped_points.loc[snapped_points["line_position"]<0.5, "node"] = closest["start_node_name"]
-        snapped_points.loc[snapped_points["line_position"]>=0.5, "node"] = closest["end_node_name"]
-        snapped_points = snapped_points[["link", "node", "snap_distance", "line_position", "geometry"]]
+        if ("start_node_name" in closest.columns) and ("end_node_name" in closest.columns):
+            snapped_points.loc[snapped_points["line_position"]<0.5, "node"] = closest["start_node_name"]
+            snapped_points.loc[snapped_points["line_position"]>=0.5, "node"] = closest["end_node_name"]
+            snapped_points = snapped_points[["link", "node", "snap_distance", "line_position", "geometry"]]
+        else:
+            snapped_points = snapped_points[["link", "snap_distance", "line_position", "geometry"]]
         snapped_points.index.name = None
 
     return snapped_points

wntr/tests/test_sim_performance.py

@@ -1,5 +1,6 @@
 import sys
 import unittest
+import pytest
 from os.path import abspath, dirname, join
 import threading
 import time
@@ -245,7 +246,8 @@ def test_Net3_performance_PDA(self):
                 rel_threshold,
             )
         )
-
+
+    @pytest.mark.time_consuming
     def test_Net6_thread_performance(self):
         """
         Test thread-safe performance of simulators
@@ -303,7 +305,8 @@ def run_wntr(wn, name):
         t2.join()
         thr_time = time.time()-start_time
         self.assertGreaterEqual(seq_time - thr_time, -1, 'WNTR threading took 1s longer than sequential')
-
+
+    @pytest.mark.time_consuming
     def test_Net6_mod_performance(self):
         head_diff_abs_threshold = 1e-3
         demand_diff_abs_threshold = 1e-5