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@USM-CHU-FGuyon USM-CHU-FGuyon released this 12 Mar 06:58
· 13 commits to master since this release

Corrections on variables and dtypes in final OMOP tables.

Bugfix:

  • Removed visit_start_date from measurement table, and string values in care_site table's place_of_service_concept_id
  • Save all OMOP tables to parquet + corrected wrong dtypes on some tables.
  • Rounding times to the second. This avoids an error due to high precision in time when writing some records to parquet OMOP tables.

Minor changes:

  • Refactored timeseriespreprocessing to timeseriesprocessor
  • Option to skip reset_dir() when starting 2_{dataset}.py