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vpc: add calculations for refcorr #251

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vpc: add calculations for refcorr

vpc: add calculations for refcorr #251

Workflow file for this run

.github/workflows/ci.yml at 4ed0bdb
name: ci
on: [push]
jobs:
build:
runs-on: ubuntu-22.04
steps:
- name: Download source repo
uses: actions/checkout@v2
with:
submodules: recursive
- name: Set up Python 3.11
uses: actions/setup-python@v2
with:
python-version: 3.11
- name: Install build dependencies
run: |
sudo apt update
sudo apt install latexmk texlive-extra-utils texlive-latex-extra texlive-plain-generic biber texlive-bibtex-extra texlive-science texlive-font-utils texlive-pictures
pip3 install tox==3.25.1
- name: make
run: make
- name: make release
run: make release
- name: Upload installation artifact
uses: actions/upload-artifact@v2
with:
name: targz
path: PsN-*.tar.gz
- name: Upload documentation artifact
uses: actions/upload-artifact@v2
with:
name: docs
path: doc/*.pdf
get-nonmem:
runs-on: ubuntu-20.04
steps:
- name: Cache NONMEM
id: cache-nonmem
uses: actions/cache@v2
with:
path: 751.zip
key: nonmem-751
- name: Download NONMEM
if: steps.cache-nonmem.outputs.cache-hit != 'true'
run: |
sudo apt install lynx
echo 'key /' >>lynxcmds
echo 'key 7' >>lynxcmds
echo 'key 5' >>lynxcmds
echo 'key 1' >>lynxcmds
echo 'key ^J' >>lynxcmds
echo 'key ^J' >>lynxcmds
echo 'key /' >>lynxcmds
echo 'key z' >>lynxcmds
echo 'key i' >>lynxcmds
echo 'key p' >>lynxcmds
echo 'key ^J' >>lynxcmds
echo 'key d' >>lynxcmds
echo 'key ^J' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key <delete>' >>lynxcmds
echo 'key 7' >>lynxcmds
echo 'key 5' >>lynxcmds
echo 'key 1' >>lynxcmds
echo 'key .' >>lynxcmds
echo 'key z' >>lynxcmds
echo 'key i' >>lynxcmds
echo 'key p' >>lynxcmds
echo 'key ^J' >>lynxcmds
echo 'key Q' >>lynxcmds
lynx -accept-all-cookies nonmem.iconplc.com -cmd_script=lynxcmds
- name: Upload cache workaround
uses: actions/upload-artifact@v2
with:
name: cache-workaround
path: 751.zip
test-ubuntu:
needs: [build, get-nonmem]
runs-on: ubuntu-22.04
steps:
- uses: actions/download-artifact@v2
with:
name: targz
- name: Cache NONMEM
id: cache-nonmem
uses: actions/cache@v2
with:
path: 751.zip
key: nonmem-751
- name: Unzip NONMEM
run: unzip -P $ZIP_KEY 751.zip
env:
ZIP_KEY: ${{secrets.ZIP_KEY}}
- name: Install gfortran
run: sudo apt install gfortran
- name: Install NONMEM
run: |
cd nm751CD
/bin/bash SETUP75 $(realpath .) $(realpath ../nm751) gfortran y ar same rec q
- name: NONMEM license
run: echo $LICENSE_KEY >nm751/license/nonmem.lic
env:
LICENSE_KEY: ${{secrets.LICENSE_KEY}}
- name: Extract PsN
run: tar -zxvf PsN-*.tar.gz
- name: Install Perl dependencies
run: |
sudo cpan -T Math::Random
sudo cpan -T MouseX::Params::Validate
sudo cpan -T Math::SigFigs
- name: Install Perl and R dependencies
run: |
sudo apt update
sudo apt install -y libmath-random-free-perl libconfig-tiny-perl libstatistics-distributions-perl libfile-homedir-perl libfile-copy-recursive-perl libyaml-perl libcapture-tiny-perl libmath-matrixreal-perl libtest-exception-perl libmouse-perl libarchive-zip-perl libfile-copy-recursive-perl r-base pandoc libpq-dev libcairo2-dev libssl-dev libcurl4-openssl-dev libmariadb-dev libgmp-dev libmpfr-dev libxml2-dev libudunits2-dev libblas-dev liblapack-dev libmagick++-dev
- name: Set up Python 3.11
uses: actions/setup-python@v2
with:
python-version: '3.11'
- name: Install PsN
run: cd PsN-Source; sudo perl setup.pl -auto
- name: Update psn.conf
run: |
export LIBPATH=$(find /usr/local/share/perl/ -type d -name '5.*')
export PSNPATH=$(find $LIBPATH -type d -name 'PsN_[0-9]*')
export NMPATH=$(realpath nm751)
sudo sed -i "/\\[nm_versions\\]/a default=$NMPATH,7.5.1" $PSNPATH/psn.conf
- name: Run unit tests
run: |
export LIBPATH=$(find /usr/local/share/perl/ -type d -name '5.*')
export TESTPATH=$(find $LIBPATH -type d -name 'PsN_test_[0-9]*')
cd $TESTPATH
prove -r -j8 unit
- name: Run system tests
run: |
export LIBPATH=$(find /usr/local/share/perl/ -type d -name '5.*')
export TESTPATH=$(find $LIBPATH -type d -name 'PsN_test_[0-9]*')
cd $TESTPATH
prove -r -j3 system
- name: Upload failed system test directories artifact
uses: actions/upload-artifact@v2
if: ${{ failure() }}
with:
name: system-tests-ubuntu
path: /tmp/PsN-test_system*
test-macos:
needs: [build, get-nonmem]
runs-on: macos-11
steps:
- name: Download installation tarball
uses: actions/download-artifact@v2
with:
name: targz
- name: Unpack installation tarball
run: tar -zxvf PsN-*.tar.gz
- name: Install system dependencies
run: brew install cairo mariadb-connector-c openssl@1.1 coreutils gnu-sed r
- name: Setup gfortran
run: |
sudo ln -s /usr/local/bin/gfortran-11 /usr/local/bin/gfortran
sudo mkdir /usr/local/gfortran
sudo ln -s /usr/local/Cellar/gcc@11/11.3.0_1/lib/gcc/11 /usr/local/gfortran/lib
- name: Setup pandoc
uses: r-lib/actions/setup-pandoc@v1
- name: Get NONMEM
id: cache-nonmem
uses: actions/cache@v2
with:
path: 751.zip
key: nonmem-751
- name: Unzip NONMEM
run: unzip -P $ZIP_KEY 751.zip
env:
ZIP_KEY: ${{secrets.ZIP_KEY}}
- name: Install NONMEM
run: |
cd nm751CD
/bin/bash SETUP75 $(realpath .) $(realpath ../nm751) gfortran y ar same rec q
- name: NONMEM license
run: echo $LICENSE_KEY >nm751/license/nonmem.lic
env:
LICENSE_KEY: ${{secrets.LICENSE_KEY}}
- name: Install Perl dependencies
run: |
sudo cpan -T Math::Random
sudo cpan -T Math::Random::Free
sudo cpan -T Math::MatrixReal
sudo cpan -T MouseX::Params::Validate
sudo cpan -T Archive::Zip
sudo cpan -T Test::Exception
sudo cpan -T Mouse
sudo cpan -T YAML
sudo cpan -T Capture::Tiny
sudo cpan -T File::Copy::Recursive
sudo cpan -T File::HomeDir
sudo cpan -T Config::Tiny
sudo cpan -T Math::SigFigs
sudo cpan -T Statistics::Distributions
- name: Install PsN
run: cd PsN-Source; perl setup.pl -auto
- name: Update psn.conf
run: |
export PSNPATH=$(find /usr/local/Cellar/perl/ -type d -name 'PsN_[0-9]*')
export NMPATH=$(realpath nm751)
sudo gsed -i "/\\[nm_versions\\]/a default=$NMPATH,7.5.1" $PSNPATH/psn.conf
- name: Run unit tests
run: |
export TESTPATH=$(find /usr/local/Cellar/perl/ -type d -name 'PsN_test_[0-9]*')
cd $TESTPATH
prove -r -j8 unit
- name: Save TMPDIR
run: echo "TEMPDIR=$TMPDIR" >> $GITHUB_ENV
- name: Run system tests
run: |
export TESTPATH=$(find /usr/local/Cellar/perl/ -type d -name 'PsN_test_[0-9]*')
cd $TESTPATH
prove -r -j4 system
- name: Upload failed system test directories artifact
uses: actions/upload-artifact@v2
if: ${{ failure() }}
with:
name: system-tests-macos
path: ${{ env.TEMPDIR }}/PsN-test_system*
build-windows:
needs: build
runs-on: windows-2019
steps:
- name: Download installation tarball
uses: actions/download-artifact@v2
with:
name: targz
- name: Unpack installation tarball
run: tar -zxvf PsN-*.tar.gz
shell: bash
- name: Download Strawberry Perl
uses: suisei-cn/actions-download-file@v1
with:
url: http://strawberryperl.com/download/5.22.3.1/strawberry-perl-5.22.3.1-64bit-portable.zip
target: downloads/
- name: Download R
uses: suisei-cn/actions-download-file@v1
with:
url: https://cran.r-project.org/bin/windows/base/old/4.0.3/R-4.0.3-win.exe
target: downloads/
- name: Download Python
uses: suisei-cn/actions-download-file@v1
with:
url: https://github.com/winpython/winpython/releases/download/7.0.20231126final/Winpython64-3.11.6.0dot.exe
target: downloads/
- name: Download Pandoc
uses: suisei-cn/actions-download-file@v1
with:
url: https://github.com/jgm/pandoc/releases/download/2.5/pandoc-2.5-windows-i386.zip
target: downloads/
- name: Show downloads
run: dir downloads
shell: cmd
- name: Create installation directory
run: |
md -Name installer
md -Name installer\strawberry
- name: Extract winpython
run: |
copy downloads\Winpython64-3.11.6.0dot.exe installer
cd installer
Winpython64-3.11.6.0dot.exe -y
del Winpython64-3.11.6.0dot.exe
rename WPy64-31160 python
shell: cmd
- name: Install Pharmpy dependencies
run:
installer\python\python-3.11.6.amd64\python.exe -m pip install -r PsN-Source\requirements.txt
shell: cmd
- name: Install Pharmpy
run: installer/python/python-3.11.6.amd64/python.exe -m pip install PsN-Source/pharmpy-core*.zip
shell: bash
- name: Move phampy executables
run: |
mv installer/python/python-3.11.6.amd64/Scripts/psn-pharmpy-wrapper.exe installer/python/python-3.11.6.amd64/
mv installer/python/python-3.11.6.amd64/Scripts/pharmpy.exe installer/python/python-3.11.6.amd64/
shell: bash
- name: Extract Strawberry Perl
run: tar -xf downloads/strawberry-perl-5.22.3.1-64bit-portable.zip -C installer\strawberry
- name: Install Math::Random
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm Math::Random --notest
shell: cmd
- name: Install Math::Random::Free
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm Math::Random::Free --notest
shell: cmd
- name: Install Math::MatrixReal
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm Math::MatrixReal --notest
shell: cmd
- name: Install MouseX::Params::Validate
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm MouseX::Params::Validate --notest
shell: cmd
- name: Install Params::Validate
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm Params::Validate --notest
shell: cmd
- name: Install YAML
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm YAML --notest
shell: cmd
- name: Install Mouse
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm Mouse --notest
shell: cmd
- name: Install Capture::Tiny
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm Capture::Tiny --notest
shell: cmd
- name: Install File::Copy::Recursive
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm File::Copy::Recursive --notest
shell: cmd
- name: Install Config::Tiny
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm Config::Tiny --notest
shell: cmd
- name: Install File::HomeDir
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm File::HomeDir --notest
shell: cmd
- name: Install Math::SigFigs
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm Math::SigFigs --notest
shell: cmd
- name: Install Statistics::Distributions
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cpanm Statistics::Distributions --notest
shell: cmd
- name: Install PsN
run: |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
cd PsN-Source
perl setup.pl relative -auto
shell: cmd
- name: Extract pandoc
run: tar -xf downloads/pandoc-2.5-windows-i386.zip -C installer
- name: Move pandoc
run: mv installer/pandoc-2.5-windows-i386/pandoc.exe installer/strawberry/perl/bin
shell: bash
- name: Setup R
uses: r-lib/actions/setup-r@v2
with:
r-version: '4.0.3'
- name: Install R
run: downloads\R-4.0.3-win.exe /VERYSILENT /DIR="installer\R"
shell: cmd
- name: Install renv
run: |
md installer\Rlib
installer\R\bin\x64\Rscript.exe -e "install.packages('renv', lib='installer/Rlib', repos='http://cran.us.r-project.org')"
shell: cmd
- name: Install R dependencies
run: installer\R\bin\x64\Rscript.exe -e ".libPaths('installer/Rlib'); options(renv.config.copy.method='R'); options(renv.consent=TRUE); renv::settings$use.cache(FALSE); renv::restore(library='installer/Rlib', lockfile='PsN-Source/PsNR/renv.lock'); Sys.setenv(TZ='Europe/Berlin', LC_TIME='C', LC_MONETARY='C'); remotes::install_local('PsN-Source/PsNR', lib='installer/Rlib', repos=NULL, dependencies=F, INSTALL_opts=c('--no-multiarch'))"
shell: cmd
- name: Move dlls
run: |
mv installer/strawberry/c/bin/libxml2-2__.dll installer/strawberry/perl/bin/
mv installer/strawberry/c/bin/liblzma-5__.dll installer/strawberry/perl/bin/
mv installer/strawberry/c/bin/libiconv-2__.dll installer/strawberry/perl/bin/
mv installer/strawberry/c/bin/zlib1__.dll installer/strawberry/perl/bin/
shell: bash
- name: Dir PsN
run: dir installer\strawberry\perl\site\lib
shell: cmd
- name: Update psn.conf
run: |
export PSNPATH=$(find installer/strawberry/perl/site/lib/ -type d -name 'PsN_[0-9]*')
echo PYTHON_PATH=../../../../../python/python-3.11.6.amd64 >tempfile
echo R=../../../../../R/bin/R.exe >>tempfile
echo R_LIB_PATH=../../../../../Rlib >>tempfile
cat ${PSNPATH}/psn.conf >>tempfile
mv tempfile ${PSNPATH}/psn.conf
shell: bash
- name: Clean R packages
run: |
echo 'import pathlib' >clean.py
echo 'import shutil' >>clean.py
echo 'import itertools' >>clean.py
echo 'rlib_path = pathlib.Path("installer") / "Rlib"' >>clean.py
echo 'rlibrary_path = pathlib.Path("installer") / "R" / "library"' >>clean.py
echo 'for package in itertools.chain(rlib_path.iterdir(), rlibrary_path.iterdir()):' >>clean.py
echo ' subdirs = ["html", "help", "doc", "libs/i386"]' >>clean.py
echo ' for subdir in subdirs:' >>clean.py
echo ' path = package / subdir' >>clean.py
echo ' if path.exists():' >>clean.py
echo ' shutil.rmtree(str(path))' >>clean.py
installer/python/python-3.11.6.amd64/python.exe clean.py
shell: bash
- name: Remove unnecessary files
run: |
cd installer
del pandoc-2.5-windows-i386\pandoc-citeproc.exe
del pandoc-2.5-windows-i386\*.html
del R\unins000.dat
del R\unins000.exe
rmdir R\tests /s /q
rmdir R\doc /s /q
rmdir R\Tcl /s /q
rmdir R\modules\i386 /s /q
rmdir R\etc\i386 /s /q
rmdir R\bin\i386 /s /q
del R\bin\config.sh
del strawberry\README.txt
del strawberry\DISTRIBUTIONS.txt
rmdir strawberry\win32 /s /q
rmdir strawberry\data /s /q
rmdir strawberry\cpan /s /q
del strawberry\c\bin\c++.exe
del strawberry\c\bin\c++filt.exe
del strawberry\c\bin\cpp.exe
del strawberry\c\bin\g++.exe
del strawberry\c\bin\x86_64-w64-mingw32-c++.exe
del strawberry\c\bin\x86_64-w64-mingw32-g++.exe
del python\*.exe
rmdir python\notebooks /s /q
rmdir python\scripts /s /q
rmdir python\python-3.11.6.amd64\tcl /s /q
rmdir python\python-3.11.6.amd64\share /s /q
rmdir python\python-3.11.6.amd64\Tools /s /q
rmdir python\python-3.11.6.amd64\Doc /s /q
rmdir python\python-3.11.6.amd64\Scripts /s /q
del python\python-3.11.6.amd64\NEWS.txt
rmdir python\python-3.11.6.amd64\libs /s /q
rmdir python\python-3.11.6.amd64\include /s /q
shell: cmd
- name: Show installer directory
run: dir installer
shell: cmd
- name: Create installation package
run: |
export filename=`ls PsN-*.tar.gz -1`
export dirname="${filename%.tar.gz}"
export packagename="${filename%.tar.gz}-windows-64bit.zip"
mv installer $dirname
7z a $packagename $dirname
echo "packagename=${packagename}" >> $GITHUB_ENV
shell: bash
- name: Upload Windows package
uses: actions/upload-artifact@v2
with:
name: win-installer
path: ${{ env.packagename }}
test-windows:
needs: [build-windows, get-nonmem]
runs-on: windows-2019
steps:
- name: Download installation tarball
uses: actions/download-artifact@v2
with:
name: win-installer
- name: Unzip installer
run: 7z x *.zip
shell: cmd
- name: Get NONMEM
uses: actions/download-artifact@v2
with:
name: cache-workaround
- name: Unzip NONMEM
run: 7z x 751.zip -p%ZIP_KEY%
env:
ZIP_KEY: ${{secrets.ZIP_KEY}}
shell: cmd
- name: NONMEM license
run: echo $LICENSE_KEY >nm751CD/nonmem.lic
env:
LICENSE_KEY: ${{secrets.LICENSE_KEY}}
shell: bash
- name: Install NONMEM
run: |
set PATH=installer\strawberry\c\bin\;%PATH%
set INSTALLDIR=%CD%\nm751
cd nm751CD
SETUP75.bat %CD% %INSTALLDIR% gfortran y ar same rec q
shell: cmd
- name: Update psn.conf
run: |
export PSNPATH=$(find . -type d -name 'PsN_[0-9]*')
export NMPATH=$(realpath nm751)
export NMPATH=D:${NMPATH:2}
sed -i "/\\[nm_versions\\]/a default=$NMPATH,7.5.1" $PSNPATH/psn.conf
cat $PSNPATH/psn.conf
shell: bash
- name: Find tests
run: |
export PSNPATH=$(find $PWD -maxdepth 1 -type d -name 'PsN-*')
export PSNPATH=D:${PSNPATH:2}
export TESTPATH=$(find $PSNPATH -type d -name 'PsN_test_[0-9]*')
export TESTPATH=D:${TESTPATH:2}
export LIBPATH=$(find $PSNPATH -type d -name 'PsN_[0-9]*')
export LIBPATH=D:${LIBPATH:2}
echo PSNPATH=$PSNPATH
echo TESTPATH=$TESTPATH
echo LIBPATH=$LIBPATH
echo "PSNPATH=$PSNPATH" >> $GITHUB_ENV
echo "TESTPATH=$TESTPATH" >> $GITHUB_ENV
echo "LIBPATH=$LIBPATH" >> $GITHUB_ENV
shell: bash
- name: Edit test paths
run: |
cd $TESTPATH
echo 'found_libpath = False' >edit.py
echo 'found_path = False' >>edit.py
echo 'with open("includes.pm", "r") as sh:' >>edit.py
echo ' with open("tempy", "w") as dh:' >>edit.py
echo ' for line in sh:' >>edit.py
echo ' stripped = line.strip()' >>edit.py
echo ' if not found_libpath and stripped.startswith("my $libpath"):' >>edit.py
echo " path = '$LIBPATH/'" >>edit.py
echo " print(f\"my \$libpath = '{path}';\", file=dh)" >>edit.py
echo ' found_libpath = True' >>edit.py
echo ' elif not found_path and stripped.startswith("our $path"):' >>edit.py
echo " path = \"$PSNPATH/strawberry/perl/bin/\"" >>edit.py
echo " print(f\"our \$path = '{path}';\", file=dh)" >>edit.py
echo ' found_path = True' >>edit.py
echo ' else:' >>edit.py
echo ' dh.write(line)' >>edit.py
../../../../../python/python-3.11.6.amd64/python.exe edit.py
rm includes.pm
mv tempy includes.pm
cat edit.py
cat includes.pm
shell: bash
- name: Run unit tests
run: |
echo %PSNPATH%
echo %TESTPATH%
set PATH=%PSNPATH%\strawberry\perl\bin;%PSNPATH%\strawberry\c\bin;%PATH%
where prove
cd %TESTPATH%
prove -r -j8 unit
shell: cmd
- name: Save TEMP
run: |
setlocal DisableDelayedExpansion
echo TEMPDIR=%TEMP%>> %GITHUB_ENV%
endlocal
shell: cmd
- name: Run system tests
run: |
set PATH=%PSNPATH%\strawberry\perl\bin;%PSNPATH%\strawberry\c\bin;%PATH%
cd %TESTPATH%
prove -r -j3 system
shell: cmd
- name: Upload failed system test directories artifact
uses: actions/upload-artifact@v2
if: ${{ failure() }}
with:
name: system-tests-windows
path: ${{ env.TEMPDIR }}\PsN-test_system*
release:
needs: [test-windows, test-macos, test-ubuntu]
runs-on: ubuntu-20.04
steps:
- name: Get PsN installer
uses: actions/download-artifact@v2
with:
name: targz
- name: Get docs
uses: actions/download-artifact@v2
with:
name: docs
- name: Get Windows installer
uses: actions/download-artifact@v2
with:
name: win-installer
- name: Release
uses: softprops/action-gh-release@v1
if: startsWith(github.ref, 'refs/tags/')
with:
files: |
PsN*.tar.gz
PsN*.zip
*.pdf
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}