Update renv.lock #276
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name: ci | |
on: [push] | |
jobs: | |
build: | |
runs-on: ubuntu-22.04 | |
steps: | |
- name: Download source repo | |
uses: actions/checkout@v2 | |
with: | |
submodules: recursive | |
- name: Set up Python 3.11 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.11 | |
- name: Install build dependencies | |
run: | | |
sudo apt update | |
sudo apt install latexmk texlive-extra-utils texlive-latex-extra texlive-plain-generic biber texlive-bibtex-extra texlive-science texlive-font-utils texlive-pictures | |
pip3 install tox==3.25.1 | |
- name: make | |
run: make | |
- name: make release | |
run: make release | |
- name: Upload installation artifact | |
uses: actions/upload-artifact@v2 | |
with: | |
name: targz | |
path: PsN-*.tar.gz | |
- name: Upload documentation artifact | |
uses: actions/upload-artifact@v2 | |
with: | |
name: docs | |
path: doc/*.pdf | |
get-nonmem: | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Cache NONMEM | |
id: cache-nonmem | |
uses: actions/cache@v2 | |
with: | |
path: 751.zip | |
key: nonmem-751 | |
- name: Download NONMEM | |
if: steps.cache-nonmem.outputs.cache-hit != 'true' | |
run: | | |
sudo apt install lynx | |
echo 'key /' >>lynxcmds | |
echo 'key 7' >>lynxcmds | |
echo 'key 5' >>lynxcmds | |
echo 'key 1' >>lynxcmds | |
echo 'key ^J' >>lynxcmds | |
echo 'key ^J' >>lynxcmds | |
echo 'key /' >>lynxcmds | |
echo 'key z' >>lynxcmds | |
echo 'key i' >>lynxcmds | |
echo 'key p' >>lynxcmds | |
echo 'key ^J' >>lynxcmds | |
echo 'key d' >>lynxcmds | |
echo 'key ^J' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key <delete>' >>lynxcmds | |
echo 'key 7' >>lynxcmds | |
echo 'key 5' >>lynxcmds | |
echo 'key 1' >>lynxcmds | |
echo 'key .' >>lynxcmds | |
echo 'key z' >>lynxcmds | |
echo 'key i' >>lynxcmds | |
echo 'key p' >>lynxcmds | |
echo 'key ^J' >>lynxcmds | |
echo 'key Q' >>lynxcmds | |
lynx -accept-all-cookies nonmem.iconplc.com -cmd_script=lynxcmds | |
- name: Upload cache workaround | |
uses: actions/upload-artifact@v2 | |
with: | |
name: cache-workaround | |
path: 751.zip | |
test-ubuntu: | |
needs: [build, get-nonmem] | |
runs-on: ubuntu-22.04 | |
steps: | |
- uses: actions/download-artifact@v2 | |
with: | |
name: targz | |
- name: Cache NONMEM | |
id: cache-nonmem | |
uses: actions/cache@v2 | |
with: | |
path: 751.zip | |
key: nonmem-751 | |
- name: Unzip NONMEM | |
run: unzip -P $ZIP_KEY 751.zip | |
env: | |
ZIP_KEY: ${{secrets.ZIP_KEY}} | |
- name: Install gfortran | |
run: sudo apt install gfortran | |
- name: Install NONMEM | |
run: | | |
cd nm751CD | |
/bin/bash SETUP75 $(realpath .) $(realpath ../nm751) gfortran y ar same rec q | |
- name: NONMEM license | |
run: echo $LICENSE_KEY >nm751/license/nonmem.lic | |
env: | |
LICENSE_KEY: ${{secrets.LICENSE_KEY}} | |
- name: Extract PsN | |
run: tar -zxvf PsN-*.tar.gz | |
- name: Install Perl dependencies | |
run: | | |
sudo cpan -T Math::Random | |
sudo cpan -T MouseX::Params::Validate | |
sudo cpan -T Math::SigFigs | |
- name: Install Perl and R dependencies | |
run: | | |
sudo apt update | |
sudo apt install -y libmath-random-free-perl libconfig-tiny-perl libstatistics-distributions-perl libfile-homedir-perl libfile-copy-recursive-perl libyaml-perl libcapture-tiny-perl libmath-matrixreal-perl libtest-exception-perl libmouse-perl libarchive-zip-perl libfile-copy-recursive-perl r-base pandoc libpq-dev libcairo2-dev libssl-dev libcurl4-openssl-dev libmariadb-dev libgmp-dev libmpfr-dev libxml2-dev libudunits2-dev libblas-dev liblapack-dev libmagick++-dev | |
- name: Set up Python 3.11 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: '3.11' | |
- name: Install PsN | |
run: cd PsN-Source; sudo perl setup.pl -auto | |
- name: Update psn.conf | |
run: | | |
export LIBPATH=$(find /usr/local/share/perl/ -type d -name '5.*') | |
export PSNPATH=$(find $LIBPATH -type d -name 'PsN_[0-9]*') | |
export NMPATH=$(realpath nm751) | |
sudo sed -i "/\\[nm_versions\\]/a default=$NMPATH,7.5.1" $PSNPATH/psn.conf | |
- name: Run unit tests | |
run: | | |
export LIBPATH=$(find /usr/local/share/perl/ -type d -name '5.*') | |
export TESTPATH=$(find $LIBPATH -type d -name 'PsN_test_[0-9]*') | |
cd $TESTPATH | |
prove -r -j8 unit | |
- name: Run system tests | |
run: | | |
export LIBPATH=$(find /usr/local/share/perl/ -type d -name '5.*') | |
export TESTPATH=$(find $LIBPATH -type d -name 'PsN_test_[0-9]*') | |
cd $TESTPATH | |
prove -r -j3 system | |
- name: Upload failed system test directories artifact | |
uses: actions/upload-artifact@v2 | |
if: ${{ failure() }} | |
with: | |
name: system-tests-ubuntu | |
path: /tmp/PsN-test_system* | |
test-macos: | |
needs: [build, get-nonmem] | |
runs-on: macos-11 | |
steps: | |
- name: Download installation tarball | |
uses: actions/download-artifact@v2 | |
with: | |
name: targz | |
- name: Unpack installation tarball | |
run: tar -zxvf PsN-*.tar.gz | |
- name: Install system dependencies | |
run: brew install cairo mariadb-connector-c openssl@1.1 coreutils gnu-sed r | |
- name: Setup gfortran | |
run: | | |
sudo ln -s /usr/local/bin/gfortran-11 /usr/local/bin/gfortran | |
sudo mkdir /usr/local/gfortran | |
sudo ln -s /usr/local/Cellar/gcc@11/11.3.0_1/lib/gcc/11 /usr/local/gfortran/lib | |
- name: Setup pandoc | |
uses: r-lib/actions/setup-pandoc@v1 | |
- name: Get NONMEM | |
id: cache-nonmem | |
uses: actions/cache@v2 | |
with: | |
path: 751.zip | |
key: nonmem-751 | |
- name: Unzip NONMEM | |
run: unzip -P $ZIP_KEY 751.zip | |
env: | |
ZIP_KEY: ${{secrets.ZIP_KEY}} | |
- name: Install NONMEM | |
run: | | |
cd nm751CD | |
/bin/bash SETUP75 $(realpath .) $(realpath ../nm751) gfortran y ar same rec q | |
- name: NONMEM license | |
run: echo $LICENSE_KEY >nm751/license/nonmem.lic | |
env: | |
LICENSE_KEY: ${{secrets.LICENSE_KEY}} | |
- name: Install Perl dependencies | |
run: | | |
sudo cpan -T Math::Random | |
sudo cpan -T Math::Random::Free | |
sudo cpan -T Math::MatrixReal | |
sudo cpan -T MouseX::Params::Validate | |
sudo cpan -T Archive::Zip | |
sudo cpan -T Test::Exception | |
sudo cpan -T Mouse | |
sudo cpan -T YAML | |
sudo cpan -T Capture::Tiny | |
sudo cpan -T File::Copy::Recursive | |
sudo cpan -T File::HomeDir | |
sudo cpan -T Config::Tiny | |
sudo cpan -T Math::SigFigs | |
sudo cpan -T Statistics::Distributions | |
- name: Install PsN | |
run: cd PsN-Source; perl setup.pl -auto | |
- name: Update psn.conf | |
run: | | |
export PSNPATH=$(find /usr/local/Cellar/perl/ -type d -name 'PsN_[0-9]*') | |
export NMPATH=$(realpath nm751) | |
sudo gsed -i "/\\[nm_versions\\]/a default=$NMPATH,7.5.1" $PSNPATH/psn.conf | |
- name: Run unit tests | |
run: | | |
export TESTPATH=$(find /usr/local/Cellar/perl/ -type d -name 'PsN_test_[0-9]*') | |
cd $TESTPATH | |
prove -r -j8 unit | |
- name: Save TMPDIR | |
run: echo "TEMPDIR=$TMPDIR" >> $GITHUB_ENV | |
- name: Run system tests | |
run: | | |
export TESTPATH=$(find /usr/local/Cellar/perl/ -type d -name 'PsN_test_[0-9]*') | |
cd $TESTPATH | |
prove -r -j4 system | |
- name: Upload failed system test directories artifact | |
uses: actions/upload-artifact@v2 | |
if: ${{ failure() }} | |
with: | |
name: system-tests-macos | |
path: ${{ env.TEMPDIR }}/PsN-test_system* | |
build-windows: | |
needs: build | |
runs-on: windows-2019 | |
steps: | |
- name: Download installation tarball | |
uses: actions/download-artifact@v2 | |
with: | |
name: targz | |
- name: Unpack installation tarball | |
run: tar -zxvf PsN-*.tar.gz | |
shell: bash | |
- name: Download Strawberry Perl | |
uses: suisei-cn/actions-download-file@v1 | |
with: | |
url: http://strawberryperl.com/download/5.22.3.1/strawberry-perl-5.22.3.1-64bit-portable.zip | |
target: downloads/ | |
- name: Download R | |
uses: suisei-cn/actions-download-file@v1 | |
with: | |
url: https://cran.r-project.org/bin/windows/base/old/4.0.3/R-4.0.3-win.exe | |
target: downloads/ | |
- name: Download Python | |
uses: suisei-cn/actions-download-file@v1 | |
with: | |
url: https://github.com/winpython/winpython/releases/download/7.0.20231126final/Winpython64-3.11.6.0dot.exe | |
target: downloads/ | |
- name: Download Pandoc | |
uses: suisei-cn/actions-download-file@v1 | |
with: | |
url: https://github.com/jgm/pandoc/releases/download/2.5/pandoc-2.5-windows-i386.zip | |
target: downloads/ | |
- name: Show downloads | |
run: dir downloads | |
shell: cmd | |
- name: Create installation directory | |
run: | | |
md -Name installer | |
md -Name installer\strawberry | |
- name: Extract winpython | |
run: | | |
copy downloads\Winpython64-3.11.6.0dot.exe installer | |
cd installer | |
Winpython64-3.11.6.0dot.exe -y | |
del Winpython64-3.11.6.0dot.exe | |
rename WPy64-31160 python | |
shell: cmd | |
- name: Install Pharmpy dependencies | |
run: | |
installer\python\python-3.11.6.amd64\python.exe -m pip install -r PsN-Source\requirements.txt | |
shell: cmd | |
- name: Install Pharmpy | |
run: installer/python/python-3.11.6.amd64/python.exe -m pip install PsN-Source/pharmpy-core*.zip | |
shell: bash | |
- name: Move phampy executables | |
run: | | |
mv installer/python/python-3.11.6.amd64/Scripts/psn-pharmpy-wrapper.exe installer/python/python-3.11.6.amd64/ | |
mv installer/python/python-3.11.6.amd64/Scripts/pharmpy.exe installer/python/python-3.11.6.amd64/ | |
shell: bash | |
- name: Extract Strawberry Perl | |
run: tar -xf downloads/strawberry-perl-5.22.3.1-64bit-portable.zip -C installer\strawberry | |
- name: Install Math::Random | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm Math::Random --notest | |
shell: cmd | |
- name: Install Math::Random::Free | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm Math::Random::Free --notest | |
shell: cmd | |
- name: Install Math::MatrixReal | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm Math::MatrixReal --notest | |
shell: cmd | |
- name: Install MouseX::Params::Validate | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm MouseX::Params::Validate --notest | |
shell: cmd | |
- name: Install Params::Validate | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm Params::Validate --notest | |
shell: cmd | |
- name: Install YAML | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm YAML --notest | |
shell: cmd | |
- name: Install Mouse | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm Mouse --notest | |
shell: cmd | |
- name: Install Capture::Tiny | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm Capture::Tiny --notest | |
shell: cmd | |
- name: Install File::Copy::Recursive | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm File::Copy::Recursive --notest | |
shell: cmd | |
- name: Install Config::Tiny | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm Config::Tiny --notest | |
shell: cmd | |
- name: Install File::HomeDir | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm File::HomeDir --notest | |
shell: cmd | |
- name: Install Math::SigFigs | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm Math::SigFigs --notest | |
shell: cmd | |
- name: Install Statistics::Distributions | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cpanm Statistics::Distributions --notest | |
shell: cmd | |
- name: Install PsN | |
run: | | |
set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH% | |
cd PsN-Source | |
perl setup.pl relative -auto | |
shell: cmd | |
- name: Extract pandoc | |
run: tar -xf downloads/pandoc-2.5-windows-i386.zip -C installer | |
- name: Move pandoc | |
run: mv installer/pandoc-2.5-windows-i386/pandoc.exe installer/strawberry/perl/bin | |
shell: bash | |
- name: Install Rtools40 | |
shell: pwsh | |
run: | | |
if(Test-path c:\\rtools40){ | |
echo "rtools40 is preinstalled" | |
} else { | |
choco install --confirm --no-progress --allow-downgrade rtools --version 4.0.0.20220206 | |
} | |
echo "c:\\rtools40\\usr\\bin" >> $GITHUB_PATH | |
- name: Install R | |
run: downloads\R-4.0.3-win.exe /VERYSILENT /DIR="installer\R" | |
shell: cmd | |
- name: Install renv | |
run: | | |
md installer\Rlib | |
installer\R\bin\x64\Rscript.exe -e "install.packages('renv', lib='installer/Rlib', repos='http://cran.us.r-project.org')" | |
shell: cmd | |
- name: Install R dependencies | |
run: installer\R\bin\x64\Rscript.exe -e ".libPaths('installer/Rlib'); options(renv.config.copy.method='R'); options(renv.consent=TRUE); renv::settings$use.cache(FALSE); renv::restore(library='installer/Rlib', lockfile='PsN-Source/PsNR/renv.lock'); Sys.setenv(TZ='Europe/Berlin', LC_TIME='C', LC_MONETARY='C'); remotes::install_local('PsN-Source/PsNR', lib='installer/Rlib', repos=NULL, dependencies=F, INSTALL_opts=c('--no-multiarch'))" | |
shell: cmd | |
- name: Move dlls | |
run: | | |
mv installer/strawberry/c/bin/libxml2-2__.dll installer/strawberry/perl/bin/ | |
mv installer/strawberry/c/bin/liblzma-5__.dll installer/strawberry/perl/bin/ | |
mv installer/strawberry/c/bin/libiconv-2__.dll installer/strawberry/perl/bin/ | |
mv installer/strawberry/c/bin/zlib1__.dll installer/strawberry/perl/bin/ | |
shell: bash | |
- name: Dir PsN | |
run: dir installer\strawberry\perl\site\lib | |
shell: cmd | |
- name: Update psn.conf | |
run: | | |
export PSNPATH=$(find installer/strawberry/perl/site/lib/ -type d -name 'PsN_[0-9]*') | |
echo PYTHON_PATH=../../../../../python/python-3.11.6.amd64 >tempfile | |
echo R=../../../../../R/bin/R.exe >>tempfile | |
echo R_LIB_PATH=../../../../../Rlib >>tempfile | |
cat ${PSNPATH}/psn.conf >>tempfile | |
mv tempfile ${PSNPATH}/psn.conf | |
shell: bash | |
- name: Clean R packages | |
run: | | |
echo 'import pathlib' >clean.py | |
echo 'import shutil' >>clean.py | |
echo 'import itertools' >>clean.py | |
echo 'rlib_path = pathlib.Path("installer") / "Rlib"' >>clean.py | |
echo 'rlibrary_path = pathlib.Path("installer") / "R" / "library"' >>clean.py | |
echo 'for package in itertools.chain(rlib_path.iterdir(), rlibrary_path.iterdir()):' >>clean.py | |
echo ' subdirs = ["html", "help", "doc", "libs/i386"]' >>clean.py | |
echo ' for subdir in subdirs:' >>clean.py | |
echo ' path = package / subdir' >>clean.py | |
echo ' if path.exists():' >>clean.py | |
echo ' shutil.rmtree(str(path))' >>clean.py | |
installer/python/python-3.11.6.amd64/python.exe clean.py | |
shell: bash | |
- name: Remove unnecessary files | |
run: | | |
cd installer | |
del pandoc-2.5-windows-i386\pandoc-citeproc.exe | |
del pandoc-2.5-windows-i386\*.html | |
del R\unins000.dat | |
del R\unins000.exe | |
rmdir R\tests /s /q | |
rmdir R\doc /s /q | |
rmdir R\Tcl /s /q | |
rmdir R\modules\i386 /s /q | |
rmdir R\etc\i386 /s /q | |
rmdir R\bin\i386 /s /q | |
del R\bin\config.sh | |
del strawberry\README.txt | |
del strawberry\DISTRIBUTIONS.txt | |
rmdir strawberry\win32 /s /q | |
rmdir strawberry\data /s /q | |
rmdir strawberry\cpan /s /q | |
del strawberry\c\bin\c++.exe | |
del strawberry\c\bin\c++filt.exe | |
del strawberry\c\bin\cpp.exe | |
del strawberry\c\bin\g++.exe | |
del strawberry\c\bin\x86_64-w64-mingw32-c++.exe | |
del strawberry\c\bin\x86_64-w64-mingw32-g++.exe | |
del python\*.exe | |
rmdir python\notebooks /s /q | |
rmdir python\scripts /s /q | |
rmdir python\python-3.11.6.amd64\tcl /s /q | |
rmdir python\python-3.11.6.amd64\share /s /q | |
rmdir python\python-3.11.6.amd64\Tools /s /q | |
rmdir python\python-3.11.6.amd64\Doc /s /q | |
rmdir python\python-3.11.6.amd64\Scripts /s /q | |
del python\python-3.11.6.amd64\NEWS.txt | |
rmdir python\python-3.11.6.amd64\libs /s /q | |
rmdir python\python-3.11.6.amd64\include /s /q | |
shell: cmd | |
- name: Show installer directory | |
run: dir installer | |
shell: cmd | |
- name: Create installation package | |
run: | | |
export filename=`ls PsN-*.tar.gz -1` | |
export dirname="${filename%.tar.gz}" | |
export packagename="${filename%.tar.gz}-windows-64bit.zip" | |
mv installer $dirname | |
7z a $packagename $dirname | |
echo "packagename=${packagename}" >> $GITHUB_ENV | |
shell: bash | |
- name: Upload Windows package | |
uses: actions/upload-artifact@v2 | |
with: | |
name: win-installer | |
path: ${{ env.packagename }} | |
test-windows: | |
needs: [build-windows, get-nonmem] | |
runs-on: windows-2019 | |
steps: | |
- name: Download installation tarball | |
uses: actions/download-artifact@v2 | |
with: | |
name: win-installer | |
- name: Unzip installer | |
run: 7z x *.zip | |
shell: cmd | |
- name: Get NONMEM | |
uses: actions/download-artifact@v2 | |
with: | |
name: cache-workaround | |
- name: Unzip NONMEM | |
run: 7z x 751.zip -p%ZIP_KEY% | |
env: | |
ZIP_KEY: ${{secrets.ZIP_KEY}} | |
shell: cmd | |
- name: NONMEM license | |
run: echo $LICENSE_KEY >nm751CD/nonmem.lic | |
env: | |
LICENSE_KEY: ${{secrets.LICENSE_KEY}} | |
shell: bash | |
- name: Install NONMEM | |
run: | | |
set PATH=installer\strawberry\c\bin\;%PATH% | |
set INSTALLDIR=%CD%\nm751 | |
cd nm751CD | |
SETUP75.bat %CD% %INSTALLDIR% gfortran y ar same rec q | |
shell: cmd | |
- name: Update psn.conf | |
run: | | |
export PSNPATH=$(find . -type d -name 'PsN_[0-9]*') | |
export NMPATH=$(realpath nm751) | |
export NMPATH=D:${NMPATH:2} | |
sed -i "/\\[nm_versions\\]/a default=$NMPATH,7.5.1" $PSNPATH/psn.conf | |
cat $PSNPATH/psn.conf | |
shell: bash | |
- name: Find tests | |
run: | | |
export PSNPATH=$(find $PWD -maxdepth 1 -type d -name 'PsN-*') | |
export PSNPATH=D:${PSNPATH:2} | |
export TESTPATH=$(find $PSNPATH -type d -name 'PsN_test_[0-9]*') | |
export TESTPATH=D:${TESTPATH:2} | |
export LIBPATH=$(find $PSNPATH -type d -name 'PsN_[0-9]*') | |
export LIBPATH=D:${LIBPATH:2} | |
echo PSNPATH=$PSNPATH | |
echo TESTPATH=$TESTPATH | |
echo LIBPATH=$LIBPATH | |
echo "PSNPATH=$PSNPATH" >> $GITHUB_ENV | |
echo "TESTPATH=$TESTPATH" >> $GITHUB_ENV | |
echo "LIBPATH=$LIBPATH" >> $GITHUB_ENV | |
shell: bash | |
- name: Edit test paths | |
run: | | |
cd $TESTPATH | |
echo 'found_libpath = False' >edit.py | |
echo 'found_path = False' >>edit.py | |
echo 'with open("includes.pm", "r") as sh:' >>edit.py | |
echo ' with open("tempy", "w") as dh:' >>edit.py | |
echo ' for line in sh:' >>edit.py | |
echo ' stripped = line.strip()' >>edit.py | |
echo ' if not found_libpath and stripped.startswith("my $libpath"):' >>edit.py | |
echo " path = '$LIBPATH/'" >>edit.py | |
echo " print(f\"my \$libpath = '{path}';\", file=dh)" >>edit.py | |
echo ' found_libpath = True' >>edit.py | |
echo ' elif not found_path and stripped.startswith("our $path"):' >>edit.py | |
echo " path = \"$PSNPATH/strawberry/perl/bin/\"" >>edit.py | |
echo " print(f\"our \$path = '{path}';\", file=dh)" >>edit.py | |
echo ' found_path = True' >>edit.py | |
echo ' else:' >>edit.py | |
echo ' dh.write(line)' >>edit.py | |
../../../../../python/python-3.11.6.amd64/python.exe edit.py | |
rm includes.pm | |
mv tempy includes.pm | |
cat edit.py | |
cat includes.pm | |
shell: bash | |
- name: Run unit tests | |
run: | | |
echo %PSNPATH% | |
echo %TESTPATH% | |
set PATH=%PSNPATH%\strawberry\perl\bin;%PSNPATH%\strawberry\c\bin;%PATH% | |
where prove | |
cd %TESTPATH% | |
prove -r -j8 unit | |
shell: cmd | |
- name: Save TEMP | |
run: | | |
setlocal DisableDelayedExpansion | |
echo TEMPDIR=%TEMP%>> %GITHUB_ENV% | |
endlocal | |
shell: cmd | |
- name: Run system tests | |
run: | | |
set PATH=%PSNPATH%\strawberry\perl\bin;%PSNPATH%\strawberry\c\bin;%PATH% | |
cd %TESTPATH% | |
prove -r -j3 system | |
shell: cmd | |
- name: Upload failed system test directories artifact | |
uses: actions/upload-artifact@v2 | |
if: ${{ failure() }} | |
with: | |
name: system-tests-windows | |
path: ${{ env.TEMPDIR }}\PsN-test_system* | |
release: | |
needs: [test-windows, test-macos, test-ubuntu] | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Get PsN installer | |
uses: actions/download-artifact@v2 | |
with: | |
name: targz | |
- name: Get docs | |
uses: actions/download-artifact@v2 | |
with: | |
name: docs | |
- name: Get Windows installer | |
uses: actions/download-artifact@v2 | |
with: | |
name: win-installer | |
- name: Release | |
uses: softprops/action-gh-release@v1 | |
if: startsWith(github.ref, 'refs/tags/') | |
with: | |
files: | | |
PsN*.tar.gz | |
PsN*.zip | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |