Adding weekly tempalte

.github/ISSUE_TEMPLATE/weekly-entry.md

@@ -0,0 +1,16 @@
+---
+name: Course week
+about: GitHub issue template for course week
+title: 'Week [#]'
+---
+
+Wellcome to week [#] of the course! You can access this week's content in the following links:
+
+- Lecture notes ([link](https://UofUEpiBio.github.io/PHS7045-advanced-programming/week-01-slides.html)|[source]())
+- Lab ([link]()|[source]())
+
+## Additional resources
+
+- Reading 1
+- Reading 2
+- ...

pages.csv

@@ -1,18 +1,18 @@
 date,week,name,lecture,lecture_source,lab,lab_source,issue,extra
-8/20 and 8/22,1,Intro to Git + Intro to classes,lectures/01-git/slides.html,lectures/01-git/slides.qmd,labs/01-git/01-git.html,labs/01-git/01-git.qmd,3,+ [quarto](https://UofUEpiBio.github.io/PHS7045-advanced-programming/quarto.html) ([source](lectures/01-git/quarto.qmd))
-8/27 and 8/29,2,R Essentials,lectures/02-essentials/slides.html,lectures/02-essentials/slides.qmd,labs/02-essentials/02-essentials.html,labs/02-essentials/02-essentials.qmd,4,+ [Homework 1](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01-essentialsSimulations.html) ([source](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01-essentialsSimulations.qmd))
-9/03 and 9/5,3,Debugging and profiling,lectures/04-debugging-and-profiling/slides.html,lectures/04-debugging-and-profiling/slides.qmd,labs/04-debugging-and-profiling/04-debugging-and-profiling.html,labs/04-debugging-and-profiling/04-debugging-and-profiling.qmd,7,
-9/10 and 9/12,4,Functions and data.table,lectures/03-more-functions-and-datatable/slides.html,lectures/03-more-functions-and-datatable/slides.qmd,labs/03-functions-and-datatable/03-functions-and-datatable.html,labs/03-functions-and-datatable/03-functions-and-datatable.qmd,5,+ [Homework 2](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01b-datatable.html) ([source](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01b-datatable.qmd))
+8/20 and 8/22,1,Intro to Git + Intro to classes,lectures/01-git/slides.html,lectures/01-git/slides.qmd,labs/01-git/01-git.html,labs/01-git/01-git.qmd,,+ [quarto](https://UofUEpiBio.github.io/PHS7045-advanced-programming/quarto.html) ([source](lectures/01-git/quarto.qmd))
+8/27 and 8/29,2,R Essentials,lectures/02-essentials/slides.html,lectures/02-essentials/slides.qmd,labs/02-essentials/02-essentials.html,labs/02-essentials/02-essentials.qmd,,+ [Homework 1](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01-essentialsSimulations.html) ([source](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01-essentialsSimulations.qmd))
+9/03 and 9/5,3,Debugging and profiling,lectures/04-debugging-and-profiling/slides.html,lectures/04-debugging-and-profiling/slides.qmd,labs/04-debugging-and-profiling/04-debugging-and-profiling.html,labs/04-debugging-and-profiling/04-debugging-and-profiling.qmd,,
+9/10 and 9/12,4,Functions and data.table,lectures/03-more-functions-and-datatable/slides.html,lectures/03-more-functions-and-datatable/slides.qmd,labs/03-functions-and-datatable/03-functions-and-datatable.html,labs/03-functions-and-datatable/03-functions-and-datatable.qmd,,+ [Homework 2](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01b-datatable.html) ([source](https://UofUEpiBio.github.io/PHS7045-advanced-programming/hw-01b-datatable.qmd))
 9/17 and 9/19,5,Introduction to C++,,,,,,"+ Homework 3 (C++), Deliver a paragraph in abstract mode describing their projects for the midterm."
-9/24 and 9/26,6,C++ in R,lectures/05-rcpp/slides.html,lectures/05-rcpp/slides.qmd,labs/05-rcpp/lab.html,labs/05-rcpp/lab.qmd,8,
-10/01 and 10/03,7,Parallel Computing,lectures/06-parallel-computing/slides.html,lectures/06-parallel-computing/slides.qmd,labs/06-parallel-computing/lab.html,labs/06-parallel-computing/lab.qmd,11,
+9/24 and 9/26,6,C++ in R,lectures/05-rcpp/slides.html,lectures/05-rcpp/slides.qmd,labs/05-rcpp/lab.html,labs/05-rcpp/lab.qmd,,
+10/01 and 10/03,7,Parallel Computing,lectures/06-parallel-computing/slides.html,lectures/06-parallel-computing/slides.qmd,labs/06-parallel-computing/lab.html,labs/06-parallel-computing/lab.qmd,,
 10/08 and 10/10,8,Fall Break,,,,,,
 10/15 and 10/17 (presentations),9,Midterm project,,,,,,
 10/22 and 10/24,10,UofU's CHPC,,,,,,+ Homework 4 (Slurm)
-10/29 and 10/31,11,Slurm,,,labs/08-openmp-slurm/lab.html,labs/08-openmp-slurm/lab.qmd,16,
-11/05 and 11/07,12,R packages I,lectures/07-rpkgs-i/slides.html,lectures/07-rpkgs-i/slides.qmd,labs/07-rpkgs-i/lab.html,labs/07-rpkgs-i/lab.qmd,12,
-11/12 and 11/14,13,R packages II,lectures/07-rpkgs-i/slides.html,lectures/07-rpkgs-i/slides.qmd,labs/07-rpkgs-i/lab.html,labs/07-rpkgs-i/lab.qmd,12,
-11/19 and 11/21,14,Automatic Reports with GitHub Actions,lectures/99-autoreport/slides.html,lectures/99-autoreport/slides.qmd,,,19,
-11/26 and 11/28 (off),15,More practice with slurm (and netplot),,,labs/09-slurm-practice/lab.html,labs/09-slurm-practice/lab.qmd,17,
+10/29 and 10/31,11,Slurm,,,labs/08-openmp-slurm/lab.html,labs/08-openmp-slurm/lab.qmd,,
+11/05 and 11/07,12,R packages I,lectures/07-rpkgs-i/slides.html,lectures/07-rpkgs-i/slides.qmd,labs/07-rpkgs-i/lab.html,labs/07-rpkgs-i/lab.qmd,,
+11/12 and 11/14,13,R packages II,lectures/07-rpkgs-i/slides.html,lectures/07-rpkgs-i/slides.qmd,labs/07-rpkgs-i/lab.html,labs/07-rpkgs-i/lab.qmd,,
+11/19 and 11/21,14,Automatic Reports with GitHub Actions,lectures/99-autoreport/slides.html,lectures/99-autoreport/slides.qmd,,,,
+11/26 and 11/28 (off),15,More practice with slurm (and netplot),,,labs/09-slurm-practice/lab.html,labs/09-slurm-practice/lab.qmd,,
 12/03 and 12/05,16,Final Prep (Hackathon),,,,,,
 12/12,17,Final,,,,,,