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Merge pull request #50 from VEuPathDB/add-differential-expression #247

Merge pull request #50 from VEuPathDB/add-differential-expression

Merge pull request #50 from VEuPathDB/add-differential-expression #247

Triggered via push December 5, 2024 21:51
Status Failure
Total duration 16m 57s
Artifacts 5

R-CMD-check.yaml

on: push
Matrix: R-CMD-check
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16 errors and 12 warnings
macos-latest (release)
Namespace dependency missing from DESCRIPTION Imports/Depends entries: ‘DESeq2’
macos-latest (release)
R CMD check found ERRORs
macos-latest (release)
Process completed with exit code 1.
macos-latest (release)
No such keg: /opt/homebrew/Cellar/pkg-config@0.29.2
windows-latest (release)
Namespace dependency missing from DESCRIPTION Imports/Depends entries: 'DESeq2'
windows-latest (release)
R CMD check found ERRORs
windows-latest (release)
Process completed with exit code 1.
ubuntu-latest (oldrel-1)
Namespace dependency missing from DESCRIPTION Imports/Depends entries: ‘DESeq2’
ubuntu-latest (oldrel-1)
R CMD check found ERRORs
ubuntu-latest (oldrel-1)
Process completed with exit code 1.
ubuntu-latest (release)
Namespace dependency missing from DESCRIPTION Imports/Depends entries: ‘DESeq2’
ubuntu-latest (release)
R CMD check found ERRORs
ubuntu-latest (release)
Process completed with exit code 1.
ubuntu-latest (devel)
Namespace dependency missing from DESCRIPTION Imports/Depends entries: ‘DESeq2’
ubuntu-latest (devel)
R CMD check found ERRORs
ubuntu-latest (devel)
Process completed with exit code 1.
macos-latest (release)
/private/var/folders/0w/4z5l9vds32nbkz7l22n8j6s80000gn/T/RtmpNzNy3K/Rbuild14a850622048/veupathUtils/man/megastudyDataReal.Rd:40: unexpected TEXT ' "VBP0000844"
macos-latest (release)
/private/var/folders/0w/4z5l9vds32nbkz7l22n8j6s80000gn/T/RtmpNzNy3K/Rbuild14a850622048/veupathUtils/man/megastudyDataReal.Rd:48: unexpected TEXT ' "Canyon Rim Church"
macos-latest (release)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
macos-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpyEfmNX/Rbuild1160742d5e3b/veupathUtils/man/megastudyDataReal.Rd:40: unexpected TEXT ' "VBP0000844"
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpyEfmNX/Rbuild1160742d5e3b/veupathUtils/man/megastudyDataReal.Rd:48: unexpected TEXT ' "Canyon Rim Church"
ubuntu-latest (oldrel-1)
megastudyDataReal.Rd:40: unexpected TEXT ' "VBP0000844"
ubuntu-latest (oldrel-1)
megastudyDataReal.Rd:48: unexpected TEXT ' "Canyon Rim Church"
ubuntu-latest (release)
/tmp/RtmpILBkOo/Rbuild18ac3b53b3dc/veupathUtils/man/megastudyDataReal.Rd:40: unexpected TEXT ' "VBP0000844"
ubuntu-latest (release)
/tmp/RtmpILBkOo/Rbuild18ac3b53b3dc/veupathUtils/man/megastudyDataReal.Rd:48: unexpected TEXT ' "Canyon Rim Church"
ubuntu-latest (devel)
/tmp/RtmpNbT9HM/Rbuild58f4e47e0c6/veupathUtils/man/megastudyDataReal.Rd:40: unexpected TEXT ' "VBP0000844"
ubuntu-latest (devel)
/tmp/RtmpNbT9HM/Rbuild58f4e47e0c6/veupathUtils/man/megastudyDataReal.Rd:48: unexpected TEXT ' "Canyon Rim Church"

Artifacts

Produced during runtime
Name Size
Linux-X64-rdevel-2-results
22.9 MB
Linux-X64-roldrel-1-4-results
22.9 MB
Linux-X64-rrelease-3-results
22.9 MB
Windows-X64-rrelease-1-results
22.9 MB
macOS-ARM64-rrelease-0-results
22.9 MB