feat: delete script too

backend/src/data/pdbAlphaFold/.gitignore

@@ -1 +1 @@
-*.pdb
+*.pdb

galaxy/delete_all.py

@@ -0,0 +1,13 @@
+import requests
+import os
+
+DIR = "../backend/src/data/pdbAlphaFold"
+
+
+def delete_protein_files():
+ os.system(f"rm -fr {DIR}")
+ os.system(f"mkdir {DIR}")
+ os.system(f"echo *.pdb > {DIR}/.gitignore")
+
+
+delete_protein_files()

galaxy/upload_all.py

@@ -1,6 +1,8 @@
 import requests
 import os
 
+CONTENT = "From the [Venom Biochemistry & Molecular Biology Laboratory](https://venombiochemistrylab.weebly.com/) and predicted using [AlphaFold](https://github.com/xinformatics/alphafold)."
+REFS = ""
 DIR = "./master_venom_galaxy"
 
 
@@ -40,7 +42,9 @@ def upload_all():
  full_path = os.path.join(DIR, fn)
  name = fn.split(".")[0].replace("_", " ")
  species_name = available_species[fn[:2]]
- upload_protein_file(full_path, name, species_name)
+ upload_protein_file(
+ full_path, name, species_name, content=CONTENT, refs=REFS
+ )
  print("uploaded", full_path, name, species_name)
  remove_box()