sh run.sh gen_api

Venom-Biochem-Lab · Dec 2, 2023 · af4e942 · af4e942
1 parent 89c1357
commit af4e942
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Showing 6 changed files with 83 additions and 20 deletions.
diff --git a/frontend/src/openapi/models/EditBody.ts b/frontend/src/openapi/models/EditBody.ts
@@ -6,6 +6,9 @@
 export type EditBody = {
  oldName: string;
  newName: string;
+ oldSpeciesName: string;
+ newSpeciesName: string;
  newContent?: (string | null);
  newRefs?: (string | null);
 };
+
diff --git a/frontend/src/openapi/models/HTTPValidationError.ts b/frontend/src/openapi/models/HTTPValidationError.ts
@@ -8,3 +8,4 @@ import type { ValidationError } from './ValidationError';
 export type HTTPValidationError = {
  detail?: Array<ValidationError>;
 };
+
diff --git a/frontend/src/openapi/models/ProteinEntry.ts b/frontend/src/openapi/models/ProteinEntry.ts
@@ -7,6 +7,8 @@ export type ProteinEntry = {
  name: string;
  length: number;
  mass: number;
+ speciesName: string;
  content?: (string | null);
  refs?: (string | null);
 };
+
diff --git a/frontend/src/openapi/models/UploadBody.ts b/frontend/src/openapi/models/UploadBody.ts
@@ -5,7 +5,9 @@
 
 export type UploadBody = {
  name: string;
+ speciesName: string;
  content: string;
  refs: string;
  pdbFileStr: string;
 };
+
diff --git a/frontend/src/openapi/models/ValidationError.ts b/frontend/src/openapi/models/ValidationError.ts
@@ -8,3 +8,4 @@ export type ValidationError = {
  msg: string;
  type: string;
 };
+
diff --git a/frontend/src/openapi/services/DefaultService.ts b/frontend/src/openapi/services/DefaultService.ts
@@ -13,10 +13,52 @@ import { request as __request } from '../core/request';
 
 export class DefaultService {
 
+ /**
+ * Get Pdb File
+ * @param proteinName
+ * @returns any Successful Response
+ * @throws ApiError
+ */
+ public static getPdbFile(
+ proteinName: string,
+ ): CancelablePromise<any> {
+ return __request(OpenAPI, {
+ method: 'GET',
+ url: '/pdb/{protein_name}',
+ path: {
+ 'protein_name': proteinName,
+ },
+ errors: {
+ 422: `Validation Error`,
+ },
+ });
+ }
+
+ /**
+ * Get Fasta File
+ * @param proteinName
+ * @returns any Successful Response
+ * @throws ApiError
+ */
+ public static getFastaFile(
+ proteinName: string,
+ ): CancelablePromise<any> {
+ return __request(OpenAPI, {
+ method: 'GET',
+ url: '/fasta/{protein_name}',
+ path: {
+ 'protein_name': proteinName,
+ },
+ errors: {
+ 422: `Validation Error`,
+ },
+ });
+ }
+
  /**
  * Get All Entries
  * Gets all protein entries from the database
- * Returns: list[ProteinEntry] if found | None if not found
+  * Returns: list[ProteinEntry] if found | None if not found
  * @returns any Successful Response
  * @throws ApiError
  */
@@ -30,19 +72,19 @@ export class DefaultService {
  /**
  * Search Entries
  * Gets a list of protein entries by a search string
- * Returns: list[ProteinEntry] if found | None if not found
- * @param query 
+  * Returns: list[ProteinEntry] if found | None if not found
+ * @param proteinName
  * @returns any Successful Response
  * @throws ApiError
  */
  public static searchEntries(
-query: string,
-): CancelablePromise<(Array<ProteinEntry> | null)> {
+ proteinName: string,
+ ): CancelablePromise<(Array<ProteinEntry> | null)> {
  return __request(OpenAPI, {
  method: 'GET',
- url: '/search-entries/{query}',
+ url: '/search-entries/{protein_name}',
  path: {
- 'query': query,
+ 'protein_name': proteinName,
  },
  errors: {
  422: `Validation Error`,
@@ -53,14 +95,14 @@ query: string,
  /**
  * Get Protein Entry
  * Get a single protein entry by its id
- * Returns: ProteinEntry if found | None if not found
- * @param proteinName 
+  * Returns: ProteinEntry if found | None if not found
+ * @param proteinName
  * @returns any Successful Response
  * @throws ApiError
  */
  public static getProteinEntry(
-proteinName: string,
-): CancelablePromise<(ProteinEntry | null)> {
+ proteinName: string,
+ ): CancelablePromise<(ProteinEntry | null)> {
  return __request(OpenAPI, {
  method: 'GET',
  url: '/protein-entry/{protein_name}',
@@ -75,13 +117,13 @@ proteinName: string,
 
  /**
  * Delete Protein Entry
- * @param proteinName 
+ * @param proteinName
  * @returns any Successful Response
  * @throws ApiError
  */
  public static deleteProteinEntry(
-proteinName: string,
-): CancelablePromise<any> {
+ proteinName: string,
+ ): CancelablePromise<any> {
  return __request(OpenAPI, {
  method: 'DELETE',
  url: '/protein-entry/{protein_name}',
@@ -96,13 +138,13 @@ proteinName: string,
 
  /**
  * Upload Protein Entry
- * @param requestBody 
+ * @param requestBody
  * @returns any Successful Response
  * @throws ApiError
  */
  public static uploadProteinEntry(
-requestBody: UploadBody,
-): CancelablePromise<(UploadError | null)> {
+ requestBody: UploadBody,
+ ): CancelablePromise<(UploadError | null)> {
  return __request(OpenAPI, {
  method: 'POST',
  url: '/protein-upload',
@@ -116,13 +158,13 @@ requestBody: UploadBody,
 
  /**
  * Edit Protein Entry
- * @param requestBody 
+ * @param requestBody
  * @returns any Successful Response
  * @throws ApiError
  */
  public static editProteinEntry(
-requestBody: EditBody,
-): CancelablePromise<(UploadError | null)> {
+ requestBody: EditBody,
+ ): CancelablePromise<(UploadError | null)> {
  return __request(OpenAPI, {
  method: 'PUT',
  url: '/protein-edit',
@@ -134,4 +176,16 @@ requestBody: EditBody,
  });
  }
 
+ /**
+ * Get All Species
+ * @returns any Successful Response
+ * @throws ApiError
+ */
+ public static getAllSpecies(): CancelablePromise<(Array<string> | null)> {
+ return __request(OpenAPI, {
+ method: 'GET',
+ url: '/all-species',
+ });
+ }
+
 }