feat: add edit functions to refs

backend/src/api_types.py

@@ -57,3 +57,4 @@ class EditBody(CamelModel):
  old_name: str # so we can identify the exact row we need to change
  new_name: str
  new_content: str | None = None
+ new_refs: str | None = None

backend/src/server.py

@@ -137,21 +137,33 @@ def edit_protein_entry(body: EditBody):
  os.rename(pdb_file_name(body.old_name), pdb_file_name(body.new_name))
 
  with Database() as db:
- # if we have content/markdown, then update it, otherwise just update the name
- if body.new_content is not None:
+ if body.new_name != body.old_name:
  db.execute(
- """UPDATE proteins SET name = %s, content = %s WHERE name = %s""",
+ """UPDATE proteins SET name = %s WHERE name = %s""",
  [
  body.new_name,
+ body.old_name,
+ ],
+ )
+
+ if body.new_content is not None:
+ db.execute(
+ """UPDATE proteins SET content = %s WHERE name = %s""",
+ [
  str_to_bytea(body.new_content),
  body.old_name,
  ],
  )
- else:
+
+ if body.new_refs is not None:
  db.execute(
- """UPDATE proteins SET name = %s WHERE name = %s""",
- [body.new_name, body.old_name],
+ """UPDATE proteins SET refs = %s WHERE name = %s""",
+ [
+ str_to_bytea(body.new_refs),
+ body.old_name,
+ ],
  )
+
  except Exception:
  return UploadError.WRITE_ERROR
 

frontend/src/routes/edit/[proteinName]/+page.svelte

@@ -4,13 +4,20 @@
  import { goto } from "$app/navigation";
  import { onMount } from "svelte";
  import { formatProteinName, humanReadableProteinName } from "$lib/format";
+ import ArticleEditor from "$lib/ArticleEditor.svelte";
 
  // key difference, here we get the information, then populate it in the upload form that can be edited
  // and reuploaded/edited
  export let data;
 
  let name: string;
- let content: string | null;
+
+ // store original too so we can see if the user changed/edited the content
+ let ogContent: string;
+ let content: string;
+ let ogRefs: string;
+ let refs: string;
+
  let uploadError: UploadError | undefined;
  let entry: ProteinEntry | null = null;
  let error = false;
@@ -26,7 +33,12 @@
  error = true;
  } else {
  name = humanReadableProteinName(entry.name);
- content = entry.content!;
+
+ content = entry.content ?? "";
+ ogContent = content; // log original content
+
+ refs = entry.refs ?? "";
+ ogRefs = refs; // log original refs
  }
  });
 </script>
@@ -54,29 +66,25 @@
  {/if}
  </div>
  <div>
- <Label for="content" class="block mb-2">Protein Article</Label>
- <Textarea
- id="content"
- placeholder="Enter markdown..."
- rows={10}
- bind:value={content}
- />
+ <ArticleEditor bind:content bind:refs />
  </div>
  <div>
  <Button
  on:click={async () => {
  if (entry) {
  if (
  name === humanReadableProteinName(entry.name) &&
- content === entry.content
+ content === ogContent &&
+ refs === ogRefs
  )
  return; // no changes no edits!
 
  try {
  const err = await Backend.editProteinEntry({
  newName: name,
  oldName: entry.name,
- newContent: content,
+ newContent: content !== ogContent ? content : undefined,
+ newRefs: refs !== ogRefs ? refs : undefined,
  });
  if (err) {
  uploadError = err;
@@ -91,7 +99,8 @@
  }
  }}
  disabled={(name === humanReadableProteinName(entry.name) &&
- content === entry.content) ||
+ content === ogContent &&
+ refs === ogRefs) ||
  name.length === 0}>Edit Protein</Button
  >