Added shared conda env location

nextflow.config

@@ -30,6 +30,9 @@ params {
  //if false, the database is queried to create one
  //if true, config.txt should be in the input directory
  is_config_file_provided = true
+
+ // if specified, use this location to load prebuilt conda environments
+ conda_env_location = ""
 }
 
 //SQL DB Plugin

nextflow_schema.json

@@ -110,13 +110,24 @@
  "default": false,
  "description": "Optional ready-made config file for splitcode. Use this to skip the databse index lookup. Must be called config.txt and put in input directory."
  }
- },
- "required": [
- "fwd_primer",
- "rev_primer",
- "primer_mismatches",
- "barcode_length"
- ]
+ }
+ },
+ "generic_options": {
+ "title": "Generic options",
+ "type": "object",
+ "fa_icon": "fas fa-file-import",
+ "description": "Less common options for the pipeline, typically set in a config file.",
+ "help_text": "These options are common to all nf-core pipelines and allow you to customise some of the core preferences for how the pipeline runs.\n\nTypically these options would be set in a Nextflow config file loaded for all pipeline runs, such as `~/.nextflow/config`.",
+ "properties": {
+ "conda_env_location": {
+ "type": "string",
+ "format": "directory-path",
+ "description": "Use this location for pre-build conda environments (if blank, new conda environments will be created).",
+ "fa_icon": "fas fa-cog",
+ "default": "",
+ "hidden": true
+ }
+ }
  }
  },
  "allOf": [
@@ -128,6 +139,9 @@
  },
  {
  "$ref": "#/definitions/demultiplex_options"
+ },
+ {
+ "$ref": "#/definitions/generic_options"
  }
  ]
 }