Save report and trace

Logging as previously configured will not work with WEHI stornext read-only changes, so using Nextflow execution reports for data provenance instead.
WEHIGenomicsRnD · May 24, 2024 · 48e8f8b · 48e8f8b
1 parent 7c368fe
commit 48e8f8b
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Showing 2 changed files with 10 additions and 22 deletions.
diff --git a/logger.config b/logger.config
diff --git a/nextflow.config b/nextflow.config
@@ -99,7 +99,14 @@ profiles {
         stubRun = true
         cleanup = false
     }
-    log {
-        includeConfig 'logger.config'
-    }
+}
+
+def trace_timestamp = new java.util.Date().format( 'yyyy-MM-dd_HH-mm-ss')
+report {
+    enabled = true
+    file    = "${params.outdir}/log/execution_report_${trace_timestamp}.html"
+}
+trace {
+    enabled = true
+    file    = "${params.outdir}/log/execution_trace_${trace_timestamp}.txt"
 }