Remove splitcode module in favour of container

Due to Milton OS upgrade, splitcode module is no longer available
WEHIGenomicsRnD · Aug 22, 2024 · 7fb5669 · 7fb5669
1 parent 7f4b068
commit 7fb5669
Showing 1 changed file with 2 additions and 5 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -73,18 +73,15 @@ profiles {
  milton {
  conda.enabled = true
  cleanup = true
- apptainer.enabled = false
- apptainer.autoMounts = false
+ apptainer.enabled = true
+ apptainer.autoMounts = true
  singularity.enabled = false
  process {
  cpus = 1
  memory = { 8.GB * task.attempt }
  time = '12h'
  errorStrategy = { 'retry' }
  maxRetries = 3
- withLabel:SplitCode {
- module = 'splitcode/0.28.3'
- }
  withLabel:CountGuides {
  cpus = 8
  memory = { 64.GB * task.attempt }