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AI-for-crystal-materials: models and benchmarks

Here we have collected papers with the theme of "AI for crystalline materials" that have appeared at top machine learning conferences and journals (ICML, ICLR, NeurIPS, AAAI, NPJ, NC, etc.) in recent years. See https://arxiv.org/abs/2408.08044 for details.

Crystalline Material Physicochemical Property Prediction

Method Paper
SchNet Schnet: A continuous-filter convolutional neural network for modeling quantum interactions (NeurIPS2017) [Paper][Code]
CGCNN Crystal graph convolutional neural networks for an accurate and interpretable prediction of material properties (Physical Review Letters, 2018) [Paper][Code]
MEGNET Graph networks as a universal machine learning framework for molecules and crystals (Chemistry of Materials, 2019) [Paper][Code]
GATGNN Graph convolutional neural networks with global attention for improved materials property prediction (Physical Chemistry Chemical Physics, 2020) [Paper][Code]
ALIGNN Atomistic line graph neural network for improved materials property predictions (npj Computational Materials, 2021) [Paper][Code]
ECN Equivariant networks for crystal structures (NeurIPS2022) [Paper][Code]
PotNet Efficient Approximations of Complete Interatomic Potentials for Crystal Property Prediction (ICML2023) [Paper][Code]
CrysGNN Crysgnn: Distilling pre-trained knowledge to enhance property prediction for crystalline materials (AAAI2023) [Paper][Code]
ETGNN A general tensor prediction framework based on graph neural networks (The Journal of Physical Chemistry Letters, 2023) [Paper]
DTNet Dielectric tensor prediction for inorganic materials using latent information from preferred potential (npj Computational Materials, 2024) [Paper][Code]
GMTNet A Space Group Symmetry Informed Network for O(3) Equivariant Crystal Tensor Prediction (ICML2024) [Paper][Code]
CEGANN CEGANN: Crystal Edge Graph Attention Neural Network for multiscale classification of materials environment (npj Computational Materials, 2023) [Paper][Code]
ComFormer Complete and Efficient Graph Transformers for Crystal Material Property Prediction (ICLR2024) [Paper][Code]
Crystalformer Crystalformer: infinitely connected attention for periodic structure encoding (ICLR2024) [Paper][Code]
Crystalformer Conformal Crystal Graph Transformer with Robust Encoding of Periodic Invariance (AAAI2024) [Paper]
E(3)NN Direct prediction of phonon density of states with Euclidean neural networks (Advanced Science, 2021) [Paper][Code]
DOSTransformer Density of States Prediction of Crystalline Materials via Prompt-guided Multi-Modal Transformer (NeurIPS2023) [Paper][Code]
Matformer Periodic Graph Transformers for Crystal Material Property Prediction (NeurIPS2022) [Paper][Code]
CrysDiff A Diffusion-Based Pre-training Framework for Crystal Property Prediction (AAAI2024) [Paper]
MOFTransformer A multi-modal pre-training transformer for universal transfer learning in metal-organic frameworks (Nature Machine Intelligence, 2023) [Paper][Code]
Uni-MOF A comprehensive transformer-based approach for high-accuracy gas adsorption predictions in metal-organic frameworks (Nature Communications, 2024) [Paper][Code]
SODNet Learning Superconductivity from Ordered and Disordered Material Structures (NeurIPS2024) [Paper][Code]

Crystalline Material Synthesis

Method Paper
G-SchNet Symmetry-adapted generation of 3d point sets for the targeted discovery of molecules (NeurIPS2019) [Paper][Code]
CDVAE Crystal Diffusion Variational Autoencoder for Periodic Material Generation (ICLR2022) [Paper][Code]
Con-CDVAE Con-CDVAE: A method for the conditional generation of crystal structures (Computational Materials Today, 2024) [Paper][Code]
Cond-CDVAE Deep learning generative model for crystal structure prediction (npj Computational Materials, 2024) [Paper][Code]
LCOMs Latent Conservative Objective Models for Data-Driven Crystal Structure Prediction (NeurIPS2023 Workshop) [Paper]
DiffCSP Crystal structure prediction by joint equivariant diffusion on lattices and fractional coordinates (NeurIPS2023) [Paper][Code]
DiffCSP-SC Learning Superconductivity from Ordered and Disordered Material Structures (NeurIPS2024) [Paper][Code]
EquiCSP Equivariant Diffusion for Crystal Structure Prediction (ICML2024) [Paper][Code]
GemsDiff Vector Field Oriented Diffusion Model for Crystal Material Generation (AAAI2024) [Paper][Code]
SyMat Towards symmetry-aware generation of periodic materials (NeurIPS2023) [Paper][Code]
EMPNN Equivariant Message Passing Neural Network for Crystal Material Discovery (AAAI2023) [Paper][Code]
UniMat Scalable Diffusion for Materials Generation (ICLR2024) [Paper][Code]
MatterGen Mattergen: a generative model for inorganic materials design (Arxiv, 2023) [Paper]
PGCGM Physics guided deep learning for generative design of crystal materials with symmetry constraints (npj Computational Materials, 2023) [Paper][Code]
CubicGAN High-throughput discovery of novel cubic crystal materials using deep generative neural networks (Advanced Science, 2021) [Paper][Code]
PCVAE PCVAE: A Physics-informed Neural Network for Determining the Symmetry and Geometry of Crystals (IJCNN2023) [Paper][Code]
DiffCSP++ Space Group Constrained Crystal Generation (ICLR2024) [Paper][Code]
FlowMM FlowMM: Generating Materials with Riemannian Flow Matching (ICML2024) [Paper][Code]
Govindarajan Behavioral Cloning for Crystal Design (ICLR2023 Workshop) [Paper][Code]
CHGFlowNet Hierarchical GFlownet for Crystal Structure Generation (NeurIPS2023 Workshop) [Paper]
LM-CM,LM-AC Language models can generate molecules, materials, and protein binding sites directly in three dimensions as xyz, cif, and pdb files (Arxiv, 2023) [Paper][Code]
CrystaLLM Crystal structure generation with autoregressive large language modeling (Nature Communications, 2024) [Paper][Code]
CrystalFormer Space Group Informed Transformer for Crystalline Materials Generation (Arxiv, 2024) [Paper][Code]
SLI2Cry An invertible, invariant crystal representation for inverse design of solid-state materials using generative deep learning (Nature Communications, 2023) [Paper][Code]
Gruver Fine-Tuned Language Models Generate Stable Inorganic Materials as Text (ICLR2024) [Paper][Code]
FlowLLM FlowLLM: Flow Matching for Material Generation with Large Language Models as Base Distributions (NeurIPS2024) [Paper][Code]
Mat2Seq Invariant Tokenization of Crystalline Materials for Language Model Enabled Generation (NeurIPS2024) [Paper]
GenMS Generative Hierarchical Materials Search (NeurIPS2024) [Paper]
ChemReasoner CHEMREASONER: Heuristic Search over a Large Language Model’s Knowledge Space using Quantum-Chemical Feedback (ICML2024) [Paper] [Code]
a²c Predicting emergence of crystals from amorphous precursors with deep learning potentials (Nature Computational Science, 2024) [Paper][Code]

Aiding Characterization

Method Paper
- Insightful classification of crystal structures using deep learning (Nature Communications, 2018) [Paper]
- Advanced steel microstructural classification by deep learning methods (Scientific Reports, 2018) [Paper]
- Neural network for nanoscience scanning electron microscope image recognition (Scientific Reports, 2017) [Paper]
- Deep Learning-Assisted Quantification of Atomic Dopants and Defects in 2D Materials (Advanced Science, 2021) [Paper]
- Classification of crystal structure using a convolutional neural network (IUCrJ,2017) [Paper]
- Synthesis, optical imaging, and absorption spectroscopy data for 179072 metal oxides (Scientific Data, 2019) [Paper]
- Adaptively driven X-ray diffraction guided by machine learning for autonomous phase identification (npj Computational Materials, 2023) [Paper] [Code]
- Automated classification of big X-ray diffraction data using deep learning models (npj Computational Materials, 2023) [Paper] [Code]
XRD-AutoAnalyzer Integrated analysis of X-ray diffraction patterns and pair distribution functions for machine-learned phase identification (npj Computational Materials, 2024) [Paper] [Code]
CrystalNet Towards end-to-end structure determination from x-ray diffraction data using deep learning (npj Computational Materials, 2024) [Paper] [Code]

Accelerating Theoretical Computation

Method Paper
BPNN Generalized neural-network representation of high-dimensional potential-energy surfaces (Physical Review Letters, 2007) [Paper]
- Gaussian approximation potentials: The accuracy of quantum mechanics, without the electrons (Physical Review Letters, 2010) [Paper]
NequIP E (3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials (Nature Communications, 2022) [Paper][Code]
CHGNet CHGNet as a pretrained universal neural network potential for charge-informed atomistic modelling (Nature Machine Intelligence, 2023) [Paper][Code]
Cormorant Cormorant: Covariant molecular neural networks (NeurIPS2019) [Paper][Code]
MACE MACE: Higher order equivariant message passing neural networks for fast and accurate force fields (NeurIPS2022) [Paper][Code]
DimeNet Directional Message Passing for Molecular Graphs (ICLR2020) [Paper][Code]
M3GNet A universal graph deep learning interatomic potential for the periodic table (Nature Computational Science, 2022) [Paper][Code]
- Injecting domain knowledge from empirical interatomic potentials to neural networks for predicting material properties (NeurIPS2022) [Paper][Code]
CHGNet CHGNet as a pretrained universal neural network potential for charge-informed atomistic modelling (Nature Machine Intelligence, 2023) [Paper][Code]
- Forces are not Enough: Benchmark and Critical Evaluation for Machine Learning Force Fields with Molecular Simulations (Transactions on Machine Learning Research, 2023) [Paper]
DeepRelax Scalable crystal structure relaxation using an iteration-free deep generative model with uncertainty quantification (Nature Communications, 2024) [Paper] [Code]

Common Dataset and Platform

Dataset Description URL
Materials Project Materials Project encompasses over 120,000 materials, each accompanied by a comprehensive specification of its crystal structure and important physical properties. Materials Project
JARVIS-DFT JARVIS-DFT encompasses data for approximately 40,000 materials and includes around one million calculated properties. JARVIS-DFT
OQMD OQMD is a repository of thermodynamic and structural properties of inorganic materials, derived from high-throughput DFT calculations. OQMD
Perov-5 Perov-5 is a specialized dataset of perovskite crystal materials, containing 18,928 different perovskite materials. Perov-5
Carbon-24 Carbon-24 is a specialized dataset of carbon materials, containing over 10,000 different carbon structures. Carbon-24
Crystallography Open Database Crystallography Open Database is a crystallography database that specializes in collecting and storing crystal structure information for inorganic compounds, small organic molecules, metal-organic compounds, and minerals. Crystallography Open Database
Raman Open Database Raman Open Database is an open database that specializes in collecting and storing Raman spectroscopy data. Raman Open Database
Inorganic Crystal Structure Database Inorganic Crystal Structure Database is the world's largest database for completely identified inorganic crystal structures. Inorganic Crystal Structure Database
Open Catalyst Project The goal of Open Catalyst Project is to utilize artificial intelligence to simulate and discover new catalysts for renewable energy storage. Open Catalyst Project
Python Materials Genomics Python Materials Genomics is a robust, open-source Python library for materials analysis, offering a range of modules for handling crystal structures, band structures, phase diagrams, and material properties. Python Materials Genomics
MatBench MatBench is a benchmark suite in the field of materials science, designed to evaluate and compare the performance of various ML models. MatBench
M² Hub M² Hub is a machine learning toolkit for materials discovery research that covers the entire workflow. M² Hub
Phonon DOS Dataset Phonon DOS Dataset contains approximately 1,500 crystalline materials whose phonon DOS is calculated from DFPT. Phonon DOS Dataset
Carolina Materials Database CMD primarily consists of ternary and quaternary materials generated by some AI methods. Carolina Materials Database
Alexandria Database Alexandria Database includes a large quantity of hypothetical crystal structures generated by ML methods or other algorithmic methodologies. Alexandria Database
Materials Project Trajectory Dataset MPtrj contains 1,580,395 atomic configurations, corresponding energies, 7,944,833 magnetic moments, 49,295,660 forces, and 14,223,555 stress values. Materials Project Trajectory Dataset
Quantum MOF QMOF is a dataset of over 20K metal-organic frameworks and coordination polymers derived from DFT. Quantum MOF
Open Materials 2024 OMat24 contains over 110 million DFT calculations focused on structural and compositional diversity. Open Materials 2024
SuperCon3D SuperCon3D contains 1,578 superconductor materials (includes 83 distinct elements), each with both Tc and crystal structure data. SuperCon3D

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