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main/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 9d51ad66de10d2456730633cfc944dfc
+config: 8fed58cbaecf8c0e51ec6fc8247a29aa
 tags: 645f666f9bcd5a90fca523b33c5a78b7

main/_modules/src/cosmicqc/analyze.html

@@ -211,7 +211,7 @@ <h1>Source code for src.cosmicqc.analyze</h1><div class="highlight"><pre>
 <span class="kn">import</span> <span class="nn">operator</span>
 <span class="kn">import</span> <span class="nn">pathlib</span>
 <span class="kn">from</span> <span class="nn">functools</span> <span class="kn">import</span> <span class="n">reduce</span>
-<span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
+<span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span>
 
 <span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
 <span class="kn">import</span> <span class="nn">yaml</span>
@@ -436,14 +436,12 @@ <h1>Source code for src.cosmicqc.analyze</h1><div class="highlight"><pre>
 
 <div class="viewcode-block" id="label_outliers">
 <a class="viewcode-back" href="../../../python-api.html#src.cosmicqc.analyze.label_outliers">[docs]</a>
-<span class="k">def</span> <span class="nf">label_outliers</span><span class="p">(</span>  <span class="c1"># noqa: PLR0913</span>
+<span class="k">def</span> <span class="nf">label_outliers</span><span class="p">(</span>
     <span class="n">df</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="n">CytoDataFrame</span><span class="p">,</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">,</span> <span class="nb">str</span><span class="p">],</span>
     <span class="n">feature_thresholds</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">float</span><span class="p">],</span> <span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
     <span class="n">feature_thresholds_file</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="n">DEFAULT_QC_THRESHOLD_FILE</span><span class="p">,</span>
     <span class="n">include_threshold_scores</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
     <span class="n">export_path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
-    <span class="n">report_path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
-    <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">],</span>
 <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">CytoDataFrame</span><span class="p">:</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Use identify_outliers to label the original dataset for</span>
@@ -545,10 +543,6 @@ <h1>Source code for src.cosmicqc.analyze</h1><div class="highlight"><pre>
     <span class="k">if</span> <span class="n">export_path</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
         <span class="n">result</span><span class="o">.</span><span class="n">export</span><span class="p">(</span><span class="n">file_path</span><span class="o">=</span><span class="n">export_path</span><span class="p">)</span>
 
-    <span class="c1"># if we have a report path, generate the report and use kwargs</span>
-    <span class="k">if</span> <span class="n">report_path</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">show_report</span><span class="p">(</span><span class="n">report_path</span><span class="o">=</span><span class="n">report_path</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
     <span class="k">return</span> <span class="n">result</span></div>