v0.1.2

Changes

• Remove cytodataframe.show_report references (@d33bs via #153)
• Enhance find_outliers and identify_outliers performance by avoiding duplication and filtering columns (@d33bs via #140)
• Bump poethepoet from 0.30.0 to 0.31.1 (@dependabot via #151)
• Bump coverage from 7.6.8 to 7.6.9 (@dependabot via #150)
• Bump jupyterlab from 4.3.1 to 4.3.2 (@dependabot via #149)
• Add pre-commit CI lite for automated fixes (@d33bs via #132)
• Bump coverage from 7.6.4 to 7.6.8 (@dependabot via #147)
• Bump pytest from 8.3.3 to 8.3.4 (@dependabot via #148)
• Bump selenium from 4.26.1 to 4.27.1 (@dependabot via #145)
• Bump sqlalchemy from 1.4.54 to 2.0.36 (@dependabot via #144)
• Bump aiohttp from 3.10.5 to 3.10.11 (@dependabot via #143)
• Bump cryptography from 43.0.0 to 43.0.1 (@dependabot via #142)
• Bump tornado from 6.4.1 to 6.4.2 (@dependabot via #141)
• Bump umap-learn from 0.5.6 to 0.5.7 (@dependabot via #135)
• Bump cytotable from 0.0.10 to 0.0.12 (@dependabot via #136)
• Bump jupyterlab from 4.2.5 to 4.3.1 (@dependabot via #137)
• Bump dunamai from 1.22.0 to 1.23.0 (@dependabot via #138)
• Bump sphinx-wagtail-theme from 6.3.0 to 6.4.0 (@dependabot via #139)
• Documentation updates (CONTIBUTING.md link, redirector, and local build guidance) (@d33bs via #133)
• Bump myst-nb from 1.1.1 to 1.1.2 (@dependabot via #131)
• Bump pytest from 8.2.1 to 8.3.3 (@dependabot via #130)
• Bump poethepoet from 0.27.0 to 0.30.0 (@dependabot via #129)
• Bump coverage from 7.6.0 to 7.6.4 (@dependabot via #128)
• Bump selenium from 4.25.0 to 4.26.1 (@dependabot via #127)

v0.1.1

Changes

• Bump cytodataframe versions within lockfile (@d33bs via #126)

v0.1.0

Changes

• Enable updated versions of CytoDataFrame to be used (@d33bs via #125)
• Update ruff formatting to py310 (@d33bs via #123)
• Add CytoDataFrame dependency; remove migrated code (@d33bs via #121)
• Bump hvplot from 0.10.0 to 0.11.1 (@dependabot via #119)
• Bump jupyterlab-code-formatter from 2.2.1 to 3.0.2 (@dependabot via #118)
• Bump black from 24.4.2 to 24.10.0 (@dependabot via #117)
• Bump plotly from 5.22.0 to 5.24.1 (@dependabot via #116)
• Bump pyyaml from 6.0.1 to 6.0.2 (@dependabot via #115)
• Bump html2image from 2.0.4.3 to 2.0.5 (@dependabot via #114)
• Bump jupytext from 1.16.2 to 1.16.4 (@dependabot via #113)
• Bump s3fs from 2024.9.0 to 2024.10.0 (@dependabot via #112)
• Bump fire from 0.6.0 to 0.7.0 (@dependabot via #111)
• Bump selenium from 4.24.0 to 4.25.0 (@dependabot via #110)
• Enable Dependabot updates to Poetry lockfile (@d33bs via #109)
• Add presentation section to docsite (@d33bs via #106)
• Disable docs builds for dependabot (@d33bs via #105)
• Turn off automatic notebook execution for docs builds (@d33bs via #103)
• Format pyproject.toml file with pyproject-fmt using pre-commit (@d33bs via #102)
• Bump actions/setup-python from 4 to 5 (@dependabot via #100)
• Enable Dependabot updates for GitHub Actions (@d33bs via #99)
• Add poster content for 2024 SBI2 conference (@d33bs via #67)

v0.0.11

Changes

• Correct post build doctree removal path (@d33bs via #95)
• Reduce UMAP rendered notebook size and avoid docsite .doctree files for publishing (@d33bs via #94)
• Add example notebook with JUMP UMAP processing (@d33bs via #88)
• Add nuclear speckles data with tests (@d33bs via #84)
• Fix docs logo link and customize other links (@d33bs via #82)
• Add find_outliers percentage of total (@d33bs via #81)
• Bump jupyterlab from 4.2.3 to 4.2.5 (@dependabot via #80)
• Remove python 3.8 from tests (@d33bs via #78)
• Add docsite html for base path redirection (@d33bs via #74)
• Add docsite (@d33bs via #73)
• Add label and identify functions to init file (@jenna-tomkinson via #71)
• Update pull request template (@d33bs via #68)

v0.0.10

Changes

• Fix for nuclear speckle image display in CytoDataFrame (@d33bs via #64)

v0.0.9

Changes

• Add code coverage badge through coverage.py (@d33bs via #63)

v0.0.8

Changes

• Update README with logo and documentation (@jenna-tomkinson via #61)
• Add CytoDataFrame segmentation mask outline capabilities for image display in notebooks (@d33bs via #59)
• Create image masks for NF1 test data (@d33bs via #56)
• Logo (@vincerubinetti via #53)
• Remove unnecessary data (@d33bs via #52)
• Bump certifi from 2024.6.2 to 2024.7.4 (@dependabot via #51)

v0.0.7

Changes

• Update SCDataFrame name to CytoDataFrame (@d33bs via #50)
• Enable cropped image-based output for .tiff files with SCDataFrame (@d33bs via #44)
• Add report generation capabilities (@d33bs via #39)
• Add CLI for coSMicQC (@d33bs via #34)

v0.0.6

Changes

• Add SCDataFrame class to enable file-based or DataFrame-based data handling (input and output) (@d33bs via #32)

v0.0.5

Changes

• Add poetry-dynamic-versioning for PyPI builds (@d33bs via #29)