Upping version number and regenerated namespace file

DESCRIPTION

@@ -3,7 +3,7 @@ Maintainer: Stefan Dentro <sd11@sanger.ac.uk>
 License: GPL-3
 Type: Package
 Title: Battenberg subclonal copy number caller
-Version: 2.2.9
+Version: 2.2.10
 Authors@R: c(person("David", "Wedge", role=c("aut"), email="dw9@sanger.ac.uk"),
     person("Peter", "Van Loo", role=c("aut")),
     person("Stefan","Dentro", email="sd11@sanger.ac.uk", role=c("aut", "cre")),
@@ -35,4 +35,4 @@ URL: https://github.com/Wedge-Oxford/battenberg
 LazyLoad: yes
 Suggests:
     testthat
-RoxygenNote: 7.1.0
+RoxygenNote: 7.1.1

NAMESPACE

@@ -1,48 +1,55 @@
 # Generated by roxygen2: do not edit by hand
 
-export()
+export(plot.haplotype.data)
 export(GetChromosomeBAFs)
 export(GetChromosomeBAFs_SNP6)
 export(allele_ratio_plot)
 export(battenberg)
 export(calc_rho_psi_refit)
 export(callChrXsubclones)
 export(callSubclones)
+export(call_multisample_MSAI)
 export(cel2baf.logr)
 export(cnfit_to_refit_suggestions)
 export(combine.baf.files)
 export(combine.impute.output)
+export(convert.impute.input.to.beagle.input)
 export(coverage_plot)
 export(fit.copy.number)
 export(gc.correct)
 export(gc.correct.wgs)
 export(generate.impute.input.snp6)
 export(generate.impute.input.wgs)
 export(get.chrom.names)
-export(get_multisample_phasing)
 export(getAlleleCounts)
 export(getBAFsAndLogRs)
+export(get_multisample_phasing)
 export(infer_gender_birdseed)
+export(input_known_haplotypes)
 export(make_posthoc_plots)
 export(parse.imputeinfofile)
-export(plot.haplotype.data)
 export(prepare_snp6)
 export(prepare_wgs)
 export(read_table_generic)
+export(run.beagle5)
 export(run.impute)
 export(run_haplotyping)
 export(segment.baf.phased)
 export(segment.baf.phased.legacy)
+export(segment.baf.phased.multisample)
 export(segment.baf.phased.sv)
+export(split_input_haplotypes)
 export(squaresplot)
 export(suggest_refit)
 export(totalcn_chrom_plot)
+export(write_battenberg_phasing)
+export(writebeagle.as.impute)
+export(writevcf.beagle)
 import(ggplot2)
 import(grDevices)
 import(graphics)
 import(stats)
 import(utils)
-import(VariantAnnotation)
 importFrom(ASCAT,ascat.plotAscatProfile)
 importFrom(ASCAT,ascat.plotNonRounded)
 importFrom(ASCAT,ascat.plotSunrise)