install fishbase directly from cran

WorldFishCenter · Aug 24, 2024 · f8e8cb2 · f8e8cb2
1 parent ca11587
commit f8e8cb2
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diff --git a/Dockerfile b/Dockerfile
@@ -67,15 +67,13 @@ RUN install2.r --error --skipinstalled \
     treemapify \
     sf
 
-# Ensure remotes package is up to date
-RUN R -e "install.packages('remotes', repos='https://cran.rstudio.com/')"
+# Install specific version of rfishbase
+RUN Rscript -e 'install.packages("rfishbase", repos="https://cran.rstudio.com/", dependencies = TRUE)'
 
 # Install GitHub packages
 RUN installGithub.r hrbrmstr/ggchicklet
 RUN installGithub.r glmmTMB/glmmTMB/glmmTMB
 
-# Install specific version of rfishbase
-RUN Rscript -e 'remotes::install_version("rfishbase", version = "4.1.2", dependencies = TRUE, verbose = TRUE)'
 
 
 #RUN Rscript -e "devtools::install_version('glmmTMB', version = '1.1.5')"

diff --git a/Dockerfile.prod b/Dockerfile.prod
@@ -80,15 +80,13 @@ RUN install2.r --error --skipinstalled \
     treemapify \
     sf
 
-# Ensure remotes package is up to date
-RUN R -e "install.packages('remotes', repos='https://cran.rstudio.com/')"
+# Install specific version of rfishbase
+RUN Rscript -e 'install.packages("rfishbase", repos="https://cran.rstudio.com/", dependencies = TRUE)'
 
 # Install GitHub packages
 RUN installGithub.r hrbrmstr/ggchicklet
 RUN installGithub.r glmmTMB/glmmTMB/glmmTMB
 
-# Install specific version of rfishbase
-RUN Rscript -e 'remotes::install_version("rfishbase", version = "4.1.2", dependencies = TRUE, verbose = TRUE)'
 
 # Install local package
 COPY . /home