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@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

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  1. VISION VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 162 32

  2. Cassiopeia Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 83 25

  3. Compass Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 99 29

  4. Hotspot Hotspot Public

    Python 95 14

  5. epitome epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 5

Repositories

Showing 10 of 62 repositories
  • Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    YosefLab/Compass’s past year of commit activity
    Python 99 BSD-3-Clause 29 50 2 Updated Dec 19, 2024
  • popV Public
    YosefLab/popV’s past year of commit activity
    Python 60 MIT 10 2 2 Updated Dec 18, 2024
  • velovi Public
    YosefLab/velovi’s past year of commit activity
    Python 38 BSD-3-Clause 7 8 2 Updated Dec 16, 2024
  • treedata Public

    anndata with trees

    YosefLab/treedata’s past year of commit activity
    Python 2 BSD-3-Clause 1 0 1 Updated Dec 16, 2024
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics’s past year of commit activity
    Python 51 BSD-3-Clause 12 11 4 Updated Dec 16, 2024
  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Dec 14, 2024
  • scvi-hub-reproducibility Public

    Reproducibility of results/figures from scvi-hub paper

    YosefLab/scvi-hub-reproducibility’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Dec 13, 2024
  • scvi-hub-models Public

    Reproducibility workflows for pre-trained scvi-tools models on Hugging Face

    YosefLab/scvi-hub-models’s past year of commit activity
    Jupyter Notebook 0 MIT 1 1 0 Updated Dec 13, 2024
  • scVI-data Public

    datasets for scVI

    YosefLab/scVI-data’s past year of commit activity
    3 1 0 0 Updated Dec 10, 2024
  • mrvi-reproducibility Public

    Nextflow pipeline for MrVI pipelines

    YosefLab/mrvi-reproducibility’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 9 3 Updated Nov 25, 2024
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