minor comment update and password hidding

.gitignore

@@ -64,3 +64,4 @@ docs/_build/
 target/
 .DS_Store
 assets/taxonomy*
+auth.json

script_e2L.py

@@ -1,28 +1,21 @@
 #!/usr/bin/env python
 import os
-import sys
-import urllib.parse
-import subprocess
-
-# debug
-#import importlib
-#spec = importlib.util.spec_from_file_location("module.name", "./e2L.py")
-#e2L = importlib.util.module_from_spec(spec)
-#spec.loader.exec_module(e2L)
-
 import e2L
-import importlib
-importlib.reload(e2L)
+import json
+#import importlib
+#importlib.reload(e2L) # to reload the module if modified
 
 # create project metadata
 projet_name = "Puerto Rico"
 filename = projet_name.replace(' ','_').replace("'",'').replace('.','')
 
 # 1. Authentify
 # Sesssion is required to download barchart data
-session = e2L.auth('rafnuss','12468935')
+with open('auth.json') as f:
+  auth = json.load(f)
+session = e2L.auth(auth['username'], auth['password'])
 
-#1. Create the Bird List loading data from eBird
+# 2. Create the Bird List loading data from eBird
 code_loc = 'PR' # See possible country code here : https://confluence.cornell.edu/display/CLOISAPI/eBird-1.1-HotSpotsByRegion + region code for each region ? where ?
 lang = ['EN'] # a single language, or list of several language en,en_US,de,en_AE,en_AU,en_IN,en_NZ,en_UK,en_ZA,es,es_AR,es_CL,es_CU, es_DO,es_ES,es_MX,es_PA,es_PR,fi,fr,fr_HT,ht_HT,in,is,pt_BR,pt_PT,tr,zh https://support.ebird.org/en/support/solutions/articles/48000804865-bird-names-in-ebird
 cat = ['species'] # domestic,form,hybrid,intergrade,issf,slash,species,spuh
@@ -32,7 +25,7 @@
 emonth = 12
 info, bird_list = e2L.bird_creator(session, code_loc, lang, cat, byear, eyear, bmonth, emonth)
 
-#3. Add Status
+# 3. Add Status
 # status can be any of the following: target (year/life - per region/world), endemic, introduced
 target_loc = "world" # or any codeLoc
 target_time = "life" # "year" "life" 
@@ -44,7 +37,7 @@
 # 4. Add endemic & Introduced
 bird_list = e2L.statusAvibase(['endemic-PR','introduce-PR'],bird_list, code_loc)
 
-#2. Define column et Condition
+# 5. Define column et Condition
 # col.append(TableInput(type,option1,option1,option2,option3))
 # type     option1                 option 2
 # checkbox   number of checkbox
@@ -72,15 +65,14 @@
 condition_rare = ['\\footnotesize{>.1\\%}'," (bird['freq']['year'] < .00) and (bird['freq']['year'] > 0.001)"]
 
 
-## Write To LateX
+# 6. Write To LateX
 #print('Write to latex')
 e2L.write_to_latex(projet_name,filename,bird_list,col,condition_tableau, condition_rare, family, format, spacing, info)
 #os.chdir('latex'); os.system(projet_name+'.tex');os.chdir('..')
 
 
-## Run Latex
-#print('Run pdflatex and open')
+# 7. Run Latex
+# print('Run pdflatex and open')
 os.system('pdflatex -output-directory=./latex/ ./latex/'+ filename + '.tex ')
 # os.system('pdflatex -output-directory=./latex/ ./latex/'+ filename + '.tex > /dev/null 2>&1')
 # os.system('"start '+ filename + '.pdf"')
-#os.chdir('..')

script_list_e2L.py

@@ -1,13 +1,12 @@
 #!/usr/bin/env python
 import os
-import sys
-import urllib.parse
-import subprocess
 import e2L
+import json
+
+with open('auth.json') as f:
+  auth = json.load(f)
+session = e2L.auth(auth['username'], auth['password'])
 
-# 1. Authentify
-# Sesssion is required to download barchart data
-session = e2L.auth('rafnuss','12468935')
 
 # https://api.ebird.org/v2/ref/hotspot/PR
 listHotspot = ['L358880','L323780','L323787','L293471','L802780','L323797','L341846','L323795','L343336','L294049','L293340','L420854','L323805','L323786','L323799','L293226','L293474','L550396','L682838','L341215','L323798','L293452','L527077','L682443','L323789','L323796','L323792','L813486','L340971']
@@ -23,13 +22,12 @@
 target_loc = "world"
 target_time = "life"
 
-format='letterpaper,margin=.3in,twocolumn' #'a4paper,margin=15mm,twocolumn'
+format='letterpaper,margin=.3in,twocolumn'
 family = False
 spacing = '.95'
 condition_tableau = ['Main table display only non-hybrid birds with occurence >1\\%.'," ( bird['freq']['year'] >= 0.01)"]
 condition_rare = ['\\footnotesize{>.1\\%}'," (bird['freq']['year'] < .00) and (bird['freq']['year'] > 0.001)"]
 
-# create project metadata
 for i,h in enumerate(listHotspot):
     projet_name = listHospotName[i]
     filename = projet_name.replace(' ','_').replace("'",'').replace('.','')

setup.py

@@ -4,7 +4,7 @@
 setup(
        # the name must match the folder name 'verysimplemodule'
         name="e2L", 
-        version='0.0.3',
+        version='0.1.0',
         license='MIT',
         author="Raphaël Nussbaumer",
         author_email="<rafnuss@gmail.com>",
@@ -13,7 +13,7 @@
         url="https://github.com/Zoziologie/ebird2latex",
         download_url="https://github.com/Zoziologie/ebird2latex/archive/refs/tags/v0.0.3.tar.gz",
         py_modules=["e2L"],
-        install_requires=['requests'],
+        install_requires=['requests','re','lxml'],
 
         keywords=['python', 'eBird', 'LaTeX'],
         classifiers= [