remove hard-coded paths from init config

a-h-b · May 29, 2022 · b403df6 · b403df6
1 parent 24bcb3e
commit b403df6
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/config/config.init.yaml b/config/config.init.yaml
@@ -2,7 +2,7 @@ mem:
  # If your HPC resource has a high memory capacity node you can set this to
  # TRUE and specify the amount of memory per core (e.g. if a node has 260 gb of
  # RAM and 10 cores it would be 26).
- big_mem_avail: FALSE
+ big_mem_avail: 0
  big_mem_per_core_gb: 26
  # Memory per core of your computing resource.
  normal_mem_per_core_gb: 2
@@ -29,7 +29,7 @@ snakemake_env: ""
 prokka_env: ""
 mantis_env: ""
 # Set path for conda envs to be installed to. By default, they will be put in `conda` in the binny dir.
-conda_source: "/data/isbio/TOOLS/conda_envs"
+conda_source: ""
 # Input a list, e.g. '2,3,4'.
 kmers: '2,3,4'
 # Mask potentially disruptive contig regions (e.g. rRNA and CRISPR elements) from k-mer counting