Merge pull request #21 from ohickl/patch-11

Update binny_main.py - ignore depth if necessary
a-h-b · Feb 1, 2022 · e075f53 · e075f53
2 parents 5816f17 + a577f84
commit e075f53
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflow/scripts/binny_main.py b/workflow/scripts/binny_main.py
@@ -27,8 +27,8 @@
 max_embedding_tries = int(snakemake.params['max_embedding_tries'])
 tsne_early_exag_iterations = int(snakemake.params['tsne_early_exag_iterations'])
 tsne_main_iterations = int(snakemake.params['tsne_main_iterations'])
-include_depth_initial = snakemake.params['include_depth_initial']
-include_depth_main = snakemake.params['include_depth_main']
+include_depth_initial = eval(snakemake.params['include_depth_initial'])
+include_depth_main = eval(snakemake.params['include_depth_main'])
 hdbscan_epsilon = float(snakemake.params['hdbscan_epsilon'])
 hdbscan_min_samples = int(snakemake.params['hdbscan_min_samples'])
 dist_metric = snakemake.params['distance_metric']