Skip to content

psygenet2r is an R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disordersPackage to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.

License

Notifications You must be signed in to change notification settings

aGutierrezSacristan/psygenet2r

Repository files navigation

psygenet2r

psygenet2r is an R package for query PsyGeNET database (www.psygenet.org) and perform co-morbidity studies within R framework.

What is this repository for?

This report is used for package distribution while we walk thought BioConductor publication process. psygenet2r is already in Biocondcutor-devel.

Package' Status

  • Version: 1.0.1
  • Authors: Alba Gutierrez-Sacristan (GRIB-UPF), Carles Hernandez-Ferrer (CREAL)
  • Maintainer: Alba Gutierrez-Sacristan (GRIB-UPF)

How to start

Installation

While BioCondutor finish updating the package, psygenet2r can be installed using devtools from this repository:

library(devtools)
install_github("aGutierrezSacristan/psygenet2r")

Querying PsyGeNET:

The following lines show two examples of how PsyGeNET can be queried using psygenet2r:

  • Gene Query
library(psygenet2r)
qg <- psygenetGene(gene = 4852, 
    database = "ALL", 
    check = FALSE
)
  • Disease Query
library(psygenet2r)
qd <- psygenetDisease(disease = "schizophrenia", 
    database = "ALL",
    evidenceIndex = c('>', 0.5) 
)

About

psygenet2r is an R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disordersPackage to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published