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Initial commit of Version 4.18.1, 27 years after stopping development
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András Aszódi
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Feb 25, 2023
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| # Makefile for DRAGON-IV | ||
| # 27-Aug-1998. (c) Andras Aszodi | ||
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| # The directory layout is as follows:- | ||
| # | ||
| # dragon4: root to the whole project <--YOU ARE HERE | ||
| # | | ||
| # +-- src++: *.c++, *.h files for the C++ modules | ||
| # | | ||
| # +-- src: *.[ch] files for the C modules | ||
| # | | ||
| # +-- test: c++, *.[ch] files for the module test programs | ||
| # | | ||
| # +-- bin: objects,libraries,executables | ||
| # | | | ||
| # | +-- irix-o32: old 32-bit SGI ABI \ | ||
| # | | | | ||
| # | +-- irix-n32: new 32/64-bit SGI ABI | | ||
| # | | | | ||
| # | +-- irix-n64: new 64-bit SGI ABI | | ||
| # | | |-- $(ABI) directories | ||
| # | +-- solaris-sparc: GCC/Solaris SPARC | | ||
| # | | | | ||
| # | +-- solaris-i86 : GCC/Solaris x86 | | ||
| # | | | | ||
| # | +-- linux: GCC/Linux ABI / | ||
| # | | | ||
| # | +-- startup: C shell scripts for env var setup | ||
| # | | ||
| # +-> lib: root of the utility hierarchy (symlink to ~/lib) | ||
| # | | ||
| # +-- irix-o32: old 32-bit SGI ABI \ | ||
| # | | | ||
| # +-- irix-n32: new 32/64-bit SGI ABI | | ||
| # | | | ||
| # +-- irix-n64: new 64-bit SGI ABI | | ||
| # | |-- $(UTILS) directories | ||
| # +-- solaris-sparc: GCC/solaris SPARC | | ||
| # | | | ||
| # +-- solaris-i86 : GCC/Solaris x86 | | ||
| # | | | ||
| # +-- linux: GCC/Linux ABI / | ||
| # | | ||
| # +-- c: C source tree | ||
| # | | | ||
| # | +-- incl: header files (*.h) | ||
| # | | | ||
| # | +-- src: function definition files (*.c) | ||
| # | | ||
| # +-- cc: C++ source tree | ||
| # | | ||
| # +-- incl: non-template class header files (*.h) | ||
| # | | ||
| # +-- src: non-template function definition files (*.c++) | ||
| # | | ||
| # +-- tmpl: template declarations (*.h) and definitions (*.c++) | ||
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| # ---- GENERAL DEFINITIONS ---- | ||
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| VERSION=4.18.1 | ||
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| # The shell | ||
| SHELL = /bin/sh | ||
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| # Location of object files and executables | ||
| BIN = bin | ||
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| # Location of the utilities | ||
| LIB = lib | ||
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| # ---- ABI-DEPENDENT DEFINITIONS ---- | ||
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| # NOTE: this Makefile supports the maintenance of incompatible | ||
| # ABIs. Currently SGI o32,n32,n64,GCC/Linux, | ||
| # GCC/Solaris (SPARC and X86) are supported. | ||
| # The current workaround is to call another Makefile in 'bin' which | ||
| # carries out the compilation of individual objects and then performs | ||
| # the linking and puts the result into the appropriate subdirectory of 'bin'. | ||
| # The choice of the ABI depends on the value of the environment variable | ||
| # DRAGON_ABI, which is normally set by 'startup.csh'. This can be | ||
| # overridden manually (if compiling for all SGI ABIs, for example) | ||
| # by specifying the desired ABI on the make command line:- | ||
| # | ||
| # make "DRAGON_ABI=irix-n32" dragon | ||
| # | ||
| # will make DRAGON for the SGI N32 ABI. | ||
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| # The ABI-specific macros are in the include files "./lib/Makefile.<ABI>" | ||
| # and "./bin/Makefile.<ABI>". The former contain general settings for | ||
| # all programs which use the "lib" utilities and will be included | ||
| # by the sub-Makefiles in both "lib" and "bin". The latter include files | ||
| # contain macros for the DRAGON package only and will be included | ||
| # by the sub-Makefile in "bin". | ||
| # When porting to a new architecture, new include files like these | ||
| # should be constructed. | ||
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| # ---- Explanation of macros ---- | ||
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| # The sub/Makefiles (one in "bin", the other in "lib") expect this | ||
| # macro to be set on the command line when invoked. | ||
| # ABI: selects the ABI directory | ||
| ABI = $(DRAGON_ABI) | ||
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| # ---- PROGRAMS ---- | ||
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| # List the program (target) names here. | ||
| PROGRAMS = dragon clumsy hbassign rank secmap sidech | ||
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| help: | ||
| @echo "Targets: " $(PROGRAMS) | ||
| @echo "ABI: " $(ABI) | ||
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| all: $(PROGRAMS) | ||
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| $(BIN)/$(ABI)/: | ||
| if ( [ ! -d $(BIN)/$(ABI) ] ) then mkdir -p $(BIN)/$(ABI); fi | ||
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| $(PROGRAMS): | ||
| if ( [ ! -d $(LIB)/$(ABI) ] ) then mkdir $(LIB)/$(ABI); fi | ||
| cd $(LIB)/$(ABI); $(MAKE) -f ../Makefile ABI='$(ABI)' all-c all-cc | ||
| if ( [ ! -d $(BIN)/$(ABI) ] ) then mkdir $(BIN)/$(ABI); fi | ||
| cd $(BIN)/$(ABI); $(MAKE) -f ../Makefile ABI='$(ABI)' VERSION='$(VERSION)' $@ | ||
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| # | ||
| # ---- MAKEFILES AND INSTALLATION SCRIPTS ---- | ||
| # | ||
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| # These are the various Makefiles which have something to do with DRAGON. | ||
| # Add a ./lib/Makefile.<ABI> to LIBMAKEFILES for each architecture. | ||
| MAKEFILES = ./Makefile ./bin/Makefile | ||
| LIBMAKEFILES = ./lib/Makefile ./lib/Makefile.irix-o32 ./lib/Makefile.irix-n32 \ | ||
| ./lib/Makefile.irix-n64 ./lib/Makefile.linux \ | ||
| ./lib/Makefile.solaris-sparc ./lib/Makefile.solaris-i86 | ||
| BINMAKEFILES = ./bin/Makefile ./bin/Makefile.irix-o32 ./bin/Makefile.irix-n32 \ | ||
| ./bin/Makefile.irix-n64 ./bin/Makefile.linux \ | ||
| ./bin/Makefile.solaris-sparc ./bin/Makefile.solaris-i86 | ||
| INSTLOC = ./bin/startup | ||
| INSTSCRIPTS = startup-dev.csh \ | ||
| $(INSTLOC)/startup-irix-o32.csh \ | ||
| $(INSTLOC)/startup-irix-n32.csh \ | ||
| $(INSTLOC)/startup-irix-n64.csh \ | ||
| $(INSTLOC)/startup-linux.csh \ | ||
| $(INSTLOC)/startup-solaris-sparc.csh \ | ||
| $(INSTLOC)/startup-solaris-i86.csh | ||
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| # | ||
| # ---- DATA FILES ---- | ||
| # | ||
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| # Default data file directory | ||
| DATA = ./data | ||
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| # Default data files | ||
| DATAFILES = $(DATA)/DEFAULT.aln $(DATA)/DEFAULT.acd $(DATA)/DEFAULT.pho \ | ||
| $(DATA)/DEFAULT.par $(DATA)/DEFAULT.sim $(DATA)/pam120.sim $(DATA)/pam250.sim \ | ||
| $(DATA)/DEFAULT.vol | ||
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| # Example subdirectory | ||
| EXAMPLE = ./example | ||
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| # | ||
| # ---- DOCUMENTATION ---- | ||
| # | ||
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| # default document directory | ||
| DOC = ./doc | ||
| MAN = $(DOC)/man1 | ||
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| # documentation | ||
| DOCDISTR = README.txt $(DOC)/ug.html $(DOC)/dragon.gif $(DOC)/infoflow.gif \ | ||
| $(DOC)/sgilogo.gif $(DOC)/penguin.gif $(DOC)/sun.gif \ | ||
| $(DOC)/gradproj.gif $(DOC)/movie.gif $(MAN)/dragon.1 $(MAN)/hbassign.1 $(MAN)/sidech.1 | ||
| DOCFILES = $(DOCDISTR) | ||
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| # | ||
| # -------- HOUSEKEEPING ------ | ||
| # | ||
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| # srclib: saves the full DRAGON source except the test code in a tarfile. | ||
| # The full library source (which is not all needed) is also saved. | ||
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| # srcown: only the DRAGON source is saved (no library) | ||
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| # distr: makes a distribution. Saves all executables in ./bin and below, | ||
| # plus data files and selected items from the documentation. | ||
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| # Tarfile names and compression program | ||
| TAR_SRCLIB = dragon-srclib-$(VERSION).tar | ||
| TAR_SRCOWN = dragon-srcown-$(VERSION).tar | ||
| TAR_EXEC = dragon-$(VERSION) | ||
| COMPRESS = gzip | ||
| UNCOMPRESS = gunzip | ||
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| # Source directories | ||
| SRC_OWN = src++ src | ||
| SRC_LIB = lib/cc/tmpl lib/cc/incl lib/cc/src lib/c/incl lib/c/src | ||
| SRCDIRS = $(SRC_OWN) $(SRC_LIB) | ||
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| # Make the archives | ||
| # the GNU tar does not understand the '-' (read from stdin) argument | ||
| # the Emacs and Nedit backup files will be deleted | ||
| srclib-gnu: | ||
| find $(SRCDIRS) \( -name '*~' -o -name '*.bck' \) -exec rm {} \; | ||
| tar -cvBz -f $(TAR_SRCLIB).gz $(SRCDIRS) $(MAKEFILES) $(LIBMAKEFILES) $(BINMAKEFILES) $(INSTSCRIPTS) $(DATAFILES) $(EXAMPLE) $(DOCFILES) | ||
| srclib: | ||
| find $(SRCDIRS) \( -name '*~' -o -name '*.bck' \) -exec rm {} \; | ||
| find $(SRCDIRS) \( -name '*.[ch]' -o -name '*.c++' \) -follow \ | ||
| | tar cvBf $(TAR_SRCLIB) - | ||
| tar rvBf $(TAR_SRCLIB) $(MAKEFILES) $(LIBMAKEFILES) $(BINMAKEFILES) $(INSTSCRIPTS) $(DATAFILES) $(EXAMPLE) $(DOCFILES) | ||
| $(COMPRESS) $(TAR_SRCLIB) | ||
| srcown: | ||
| find $(SRCDIRS) \( -name '*~' -o -name '*.bck' \) -exec rm {} \; | ||
| find $(SRC_OWN) \( -name '*.[ch]' -o -name '*.c++' \) -follow \ | ||
| | tar cvBf $(TAR_SRCOWN) - | ||
| tar rvBf $(TAR_SRCOWN) $(MAKEFILES) $(INSTSCRIPTS) $(DATAFILES) $(EXAMPLE) $(DOCFILES) | ||
| $(COMPRESS) $(TAR_SRCOWN) | ||
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| distr: | ||
| cd $(BIN)/$(ABI); strip $(PROGRAMS) | ||
| tar cvBf $(TAR_EXEC)-$(ABI).tar `find $(BIN)/$(ABI) -type f -perm -100` | ||
| tar rvBf $(TAR_EXEC)-$(ABI).tar $(DATAFILES) $(EXAMPLE) $(DOCDISTR) $(INSTLOC)/startup-$(ABI).csh; $(COMPRESS) $(TAR_EXEC)-$(ABI).tar | ||
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| # cleanup: removes all DRAGON object files and libraries | ||
| # corresponding to the current ABI | ||
| clean: clean-bin clean-lib | ||
| clean-bin: | ||
| if ( [ -d $(BIN)/$(ABI) ] ) then cd $(BIN)/$(ABI); rm -f *.[oa] ii_files/* ; fi | ||
| clean-lib: | ||
| if ( [ -d $(LIB)/$(ABI) ] ) then cd $(LIB)/$(ABI); rm -f *.[oa] ii_files/* ; fi | ||
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