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SPAdes usecases

Refine quick start #16

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Refine quick start

Refine quick start #16

Triggered via push April 5, 2024 08:30
@aslasl
pushed 5efe28a
next
Status Success
Total duration 58m 34s
Artifacts 1

usecases.yml

on: push
🚧 Build SPAdes
3m 58s
🚧 Build SPAdes
Multicell B.cereus TruSeq 100x
4m 17s
Multicell B.cereus TruSeq 100x
Nextera L.monocytogenes
1m 5s
Nextera L.monocytogenes
Contigs E.coli JGI lane 7
3m 58s
Contigs E.coli JGI lane 7
Full run M.ruber JGI lane 9
5m 36s
Full run M.ruber JGI lane 9
IonTorrent E.coli K12
29m 13s
IonTorrent E.coli K12
Mate-pairs B.faecium
2m 47s
Mate-pairs B.faecium
Single-cell P.heparinus JGI lane 7
2m 58s
Single-cell P.heparinus JGI lane 7
plasmidSPAdes C.callunae
7m 17s
plasmidSPAdes C.callunae
Single reads E.coli Deeptrench
1m 38s
Single reads E.coli Deeptrench
PacBio M.ruber
3m 49s
PacBio M.ruber
Saves E.coli 100K
44s
Saves E.coli 100K
Saves E.coli UCSD lane 1
8m 38s
Saves E.coli UCSD lane 1
metaSPAdes JGI 150
15m 35s
metaSPAdes JGI 150
metaviralSPAdes ERR525599
14m 44s
metaviralSPAdes ERR525599
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17 warnings
🚧 Build SPAdes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Mate-pairs B.faecium
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Mate-pairs B.faecium
Failed to download action 'https://api.github.com/repos/actions/download-artifact/tarball/9bc31d5ccc31df68ecc42ccf4149144866c47d8a'. Error: Response status code does not indicate success: 500 (Internal Server Error).
Mate-pairs B.faecium
Back off 28.304 seconds before retry.
Contigs E.coli JGI lane 7
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Multicell B.cereus TruSeq 100x
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Full run M.ruber JGI lane 9
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Nextera L.monocytogenes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
plasmidSPAdes C.callunae
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Single-cell P.heparinus JGI lane 7
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
metaSPAdes JGI 150
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
metaviralSPAdes ERR525599
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Single reads E.coli Deeptrench
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Saves E.coli 100K
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
PacBio M.ruber
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Saves E.coli UCSD lane 1
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
IonTorrent E.coli K12
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/download-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

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build-artifacts Expired
15.7 MB