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changelog + manual kernel note
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andrewprzh committed Dec 26, 2019
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2 changes: 2 additions & 0 deletions README.md
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Expand Up @@ -179,6 +179,8 @@ To download [SPAdes Linux binaries](http://cab.spbu.ru/files/release3.14.0/SPAde

In this case you do not need to run any installation scripts – SPAdes is ready to use. We also suggest adding SPAdes installation directory to the `PATH` variable. []()

Note, that pre-build binaries do not work on new Linux kernels.

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## Downloading SPAdes binaries for Mac

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28 changes: 28 additions & 0 deletions assembler/changelog.html
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<h2>SPAdes Genome Assembler changelog</h2>

<h3>SPAdes 3.14.0, 27 December 2019</h3>

<p>NEW: BiosyntheticSPAdes pipeline for predicting Biosynthetic Gene Clusters.</p>

<p>NEW: Hybrid transcriptome assembly with rnaSPAdes.</p>

<p>NEW: Plasmid detection from metagenomic samples.</p>

<p>NEW: Special <code>--isolate</code> option for assembly of standard datasets with good coverage (>100x).</p>

<p>NEW: Standalone tool for reads filtration based on k-mer coverage.</p>

<p>NEW: Standalone tool for estimating approximate number of unique k-mers in reads.</p>

<p>CHANGE: Improved SPAligner tool.</p>

<p>CHANGE: Reworked python code, faster sequence transfer between different k-mer stages.</p>

<p>CHANGE: Multiple performance improvements in graph construction and simplification procedures.</p>

<p>FIX: BWA aligner failure for large graphs.</p>

<p>FIX: Failure when additional paired-end libraries with reads shorter than final k-mer length are provided.</p>

<h3>SPAdes 3.13.2, 31 October 2019</h3>

<p>FIX: Incorrect k-mer size estimation in rnaSPAdes.</p>

<h3>SPAdes 3.13.1, 11 April 2019</h3>

<p>CHANGE: Removed BayesHammer from rnaSPAdes pipeline.</p>
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1 change: 1 addition & 0 deletions assembler/manual.html
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Expand Up @@ -151,6 +151,7 @@ <h2>Downloading SPAdes Linux binaries</h2>
tar -xzf SPAdes-3.14.0-Linux.tar.gz
<span class="pl-c1">cd</span> SPAdes-3.14.0-Linux/bin/</pre></div>
<p>In this case you do not need to run any installation scripts – SPAdes is ready to use. We also suggest adding SPAdes installation directory to the <code>PATH</code> variable. <a href=""></a></p>
<p>Note, that pre-build binaries do not work on new Linux kernels.</p>
<p><a name="sec2.2"></a></p>
<h2>Downloading SPAdes binaries for Mac</h2>
<p>To obtain <a href="http://cab.spbu.ru/files/release3.14.0/SPAdes-3.14.0-Darwin.tar.gz" rel="nofollow">SPAdes binaries for Mac</a>, go to the directory in which you wish SPAdes to be installed and run:</p>
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