Skip to content

Commit

Permalink
Typo
Browse files Browse the repository at this point in the history
  • Loading branch information
asl committed May 24, 2024
1 parent d08660f commit f2e213d
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docs/input.md
Original file line number Diff line number Diff line change
Expand Up @@ -65,7 +65,7 @@ See [examples](running.md#examples).

## Reading NCBI SRA files

[NCBI SRA](https://www.ncbi.nlm.nih.gov/sra/docs/sra-data-formats) uses a binary format to store reads. SPAdes has an ability to read these files directly, so there is no need to convert them into intermediate FASTQ files. However, this brings additional dependency on NCBI SDK, which may cause compatibility issues. Overall, to assemble reads from SRA files make sure that:
[NCBI SRA](https://www.ncbi.nlm.nih.gov/sra/docs/sra-data-formats) uses a binary format to store reads. SPAdes has the ability to read these files directly, so there is no need to convert them into intermediate FASTQ files. However, this brings additional dependency on NCBI SDK, which may cause compatibility issues. Overall, to assemble reads from SRA files make sure that:

- SPAdes is compiled with NCBI SDK support enabled (pass `-DSPADES_USE_NCBISDK=ON` to `spades_compile.sh`, disabled by default). No action is required if you use pre-compiled release binaries.
- Input files have `.sra` extension.
Expand Down

0 comments on commit f2e213d

Please sign in to comment.