SpLitteR: early access version
Pre-release
Description
SpLitteR is a tool that uses linked reads to improve the contiguity of HiFi assemblies. Given a linked-read library and a HiFi assembly graph in the GFA format, SpLitteR resolves repeats in the assembly graph using linked-reads and generates a simplified (more contiguous) assembly graph with corresponding scaffolds.
This is an early preview version of SpLitteR to supplement the publication.
Availability
SpLitteR is implemented on top of SPAdes and will be available as a part of SPAdes package. For now one can download, build, and try pre-release version of SpLitteR included in this package.
Contact
In case of any questions, suggestions, bug reports, please write to spades.support@cab.spbu.ru or directly to Ivan Tolstoganov.
Support
If you have a problem running SpLitteR you can look for a similar issue on our GitHub repository, create a new one or write us via e-mail: [spades.support@cab.spbu.ru].