Skip to content

SPAdes 3.15.0

Compare
Choose a tag to compare
@asl asl released this 14 Jan 09:00

NEW: CoronaSPAdes pipeline for assembly of full-length coronaviridae genomes from the transcriptomic and metatranscriptomic data.
NEW: Meta-Viral and RNA-Viral pipelines for identifying viral genomes for metagenomic and metatranscriptomic data.
NEW: Novel algorithm for trusted contig usage.
NEW: Switched to mimalloc memory allocator.
NEW: PlasmidSPAdes and bgcSPAdes now support assembly graph as an input.
CHANGE: Significant improvements and fixes for metaplasmid pipeline.
CHANGE: Multiple performance improvements in simplification and repeat resolving procedures.
DEPRECATED: Support for Lucigen NxSeqВ® Long Mate Pair reads.
DEPRECATED: truSPAdes pipeline for TruSeq barcode assembly (still present in this release but no longer supported).