v0.0.3: MSK knee pipeline
Pre-release
Pre-release
Features:
- segment DESS images using unet model trained on OAI dataset - not segmentation accuracy has not been quantified
- register cubequant and cones sequence scans to DESS
- calculate T2, T1rho, and T2* using DESS, Cubequant, and Cones respectively
- 2D visualization maps for femoral cartilage
- save quantitative values to excel file