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v0.0.3: MSK knee pipeline

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@ad12 ad12 released this 08 Oct 05:14
· 508 commits to master since this release

Features:

  • segment DESS images using unet model trained on OAI dataset - not segmentation accuracy has not been quantified
  • register cubequant and cones sequence scans to DESS
  • calculate T2, T1rho, and T2* using DESS, Cubequant, and Cones respectively
  • 2D visualization maps for femoral cartilage
  • save quantitative values to excel file