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Update README.md
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adriantich authored Dec 21, 2021
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Expand Up @@ -318,8 +318,8 @@ be accepted as a true sequence after the denoising procedure is finished.

To test how DnoisE can be used with a small dataset and examples of command lines, in the test-DnoisE directory two dataset
are stored in three different file format (.csv, .fasta, .fastq). The first dataset contains sequences of different
lengths to show how entropy correction runs with different sequence lengths. The second dataset consist on the sequences
of 313bp from the former. In the test-DnoisE.txt some command lines are given as example.
lengths to show how entropy correction runs with different sequence lengths. The second dataset consists of the sequences
of 313bp from the former. In the test-DnoisE.txt some command lines are given as examples.

#### __Running DnoisE after SWARM within MOTU__

Expand Down Expand Up @@ -363,4 +363,4 @@ __*LULU FILE (OPTIONAL)*__
* output file from lulu with deleted/corrected sequences

Some pipelines (e.g. [MJOLNIR](https://github.com/uit-metabarcoding/MJOLNIR)) use
[LULU](https://github.com/tobiasgf/lulu) to merge incorrect MOTUs to correct ones. This script retrieves MOTU sequence composition from original MOTUs generated by SWARM. Therefore, a *-l* [output_file_from_lulu] file us mandatory if LULU is used, as it gives information on which MOTUs have to be merged according to LULU results.
[LULU](https://github.com/tobiasgf/lulu) to merge incorrect MOTUs to correct ones. This script retrieves MOTU sequence composition from original MOTUs generated by SWARM. Therefore, a *-l* [output_file_from_lulu] file is mandatory if LULU is used, as it gives information on which MOTUs have to be merged according to LULU results.

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