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Welcome to the SLIM wiki

In these pages you will find tutorials for beginners and programmers and details on each module.

Tutorials

• Start with SLIM (In progress)
• How to write a module

List of the modules:

ASVs inference / OTUs clustering

• DADA2

Demultiplexers

• Double Tag Demultiplexing (DTD)

Paired-end joiners

• Pandaseq joining
• Casper
• Mergepair vsearch

Chimeras

• Chimera Vsearch

Clustering

• Clustering vsearch
• SWARM v2

Post-clustering

• LULU post clustering

Assignment

• fasta - vsearch
• OTU table - vsearch
• OTU/ASV table - IDTAXA
• FASTA - IDTAXA

Utils

• Dereplication
• Basic FASTA filtering
• Basic OTU filtering
• FASTA merging
• FASTQ to FASTA