Added txt file handling for bibcodes in run.py

.github/workflows/python_actions.yml

@@ -20,20 +20,20 @@ jobs:
 
     - name: Install dependencies
       run: |
-        python -m pip install --upgrade wheel setuptools pip
+        python -m pip install --upgrade wheel setuptools pip==24.0
         pip install -U -r requirements.txt
         pip install -U -r dev-requirements.txt
 
     - name: Test with pytest
       run: |
         Xvfb :99 -ac -screen 0 1024x768x8 &
         export DISPLAY=:99
-        py.test -vv -s
+        py.test -vv -s --cov=.
 
-    - uses: actions/upload-artifact@v2
+    - name: Upload coverage report
+      uses: actions/upload-artifact@v4
       with:
         name: coverage-adsorcid
-        path: .coverage
 
 
   coveralls:
@@ -49,13 +49,14 @@ jobs:
 
     - name: Install dependencies
       run: |
-        python -m pip install --upgrade wheel setuptools pip
+        python -m pip install --upgrade wheel setuptools pip==24.0
         pip install coverage==5.2.1
         pip install coveralls==2.2.0
 
-    - uses: actions/download-artifact@v2
+    - uses: actions/download-artifact@v4
       with:
         name: coverage-adsorcid
+        path: .coverage
 
     - name: Coveralls
       run: coveralls

run.py

@@ -250,9 +250,19 @@ def reprocess_bibcodes(bibcodes, force=False):
 
     if type(bibcodes) != list:
         if type(bibcodes) == str:
-            bibcodes = [bibcodes]
+            if bibcodes.startswith('@'):
+                tmp_bibcodes = []
+                with open(bibcodes.replace('@', '')) as fp:
+                    for line in fp:
+                        if line.startswith('#'):
+                            continue
+                        b = line.strip()
+                        tmp_bibcodes.append(b)
+                bibcodes = tmp_bibcodes
+            else:
+                bibcodes = [bibcodes]
         else:
-            raise TypeError('Bibcodes must be list or string')
+            raise TypeError('Bibcodes must be list, string, or filename starting with @')
 
     for bibcode in bibcodes:
         logger.debug('Reprocessing bibcode {}'.format(bibcode))