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* General SCENIC questions s-aibar

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runSCENIC_3_scoreCells error

alisyedraza1 asked Nov 16, 2023 in [R] · Unanswered

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How to merge two or more auc.loom

Jingle0814 asked Nov 9, 2023 in [R] · Unanswered

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How to run pyscenic by cell type and combine the results to visualize

Jingle0814 asked Nov 9, 2023 in * General SCENIC questions · Unanswered

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Transcription Factor to Regulon

yuw444 asked Oct 12, 2023 in * General SCENIC questions · Unanswered

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Getting regulon output table

bvaldebenitom asked Apr 4, 2023 in [Python] · Unanswered

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Number of cells and different results

lukais-iohan asked Oct 2, 2023 in [Python] · Unanswered

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grnboost2 scaling

tfrudakis asked Sep 26, 2023 in * General SCENIC questions · Unanswered

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Full SCENIC Pipeline for chicken

austinkunch asked Sep 16, 2023 in * General SCENIC questions · Unanswered

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Can I only keep genes that are TFs or in the feather file?

xinghansun asked Sep 13, 2023 in * General SCENIC questions · Unanswered

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Some targets contain their TF of the regulon.

xinghansun asked Sep 11, 2023 in [Python] · Unanswered

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Loom File Upload to Scope

Su870 asked Feb 8, 2023 in * General SCENIC questions · Unanswered

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Missing 5kb TSS files for human in cistargets resources database

pcm32 asked Jul 19, 2023 in * General SCENIC questions · Answered

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Does the same count matrix with different cellinfo generates different result?

parkjooyoung99 asked Aug 26, 2023 in * General SCENIC questions · Closed · Unanswered

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Run docker steps, now what??

faizjab asked Aug 22, 2023 in * General SCENIC questions · Unanswered

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KeyError: 'RegulonsAUC' when running PBMC10k_SCENIC-protocol-CLI

geenaildefonso asked Aug 16, 2023 in [Python] · Unanswered

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RcisTarget databases for sus scrofa

ZhenyiWangTHU asked Aug 14, 2023 in [R] · Unanswered

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Different results from CLI and pySCENIC

SeZuNo asked Jul 12, 2023 in [Python] · Unanswered

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runSCENIC_4_aucell_binarize error

GreyRockIQ asked Jun 13, 2022 in [R] · Unanswered

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Runtime with 4224 cells, 9356 genes, 1 core

parkjooyoung99 asked Jun 6, 2023 in * General SCENIC questions · Closed · Unanswered

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SCENIC no longer running in R?

mattbcvs asked Apr 24, 2023 in [R] · Unanswered

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Sort by cell type in Step 4 heatmaps

Gorman222 asked Oct 31, 2019 in [R] · Unanswered

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Installation of [r-scenic] using conda

jinhys asked Apr 11, 2023 in [R] · Unanswered

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Sum of AUCell Scores

DHelix asked Mar 20, 2023 in * General SCENIC questions · Unanswered

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pySCENIC cannot reproduce AUCell + tSNE projection from a tutorial

ninhleba asked Mar 20, 2023 in * General SCENIC questions · Unanswered

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How does sequencing depth and cell composition affect RSS outcome?

Jiayi-Zheng asked Mar 7, 2023 in * General SCENIC questions · Unanswered

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