aertslab SCENIC · Discussions · GitHub

SCENIC-related questions
* General SCENIC questions s-aibar

Sort by: Latest activity

Categories

Discussions

Sort and Finalize the result?

HocheolJang426 asked Apr 11, 2022 in [R] · Answered

1
You must be logged in to vote

difficulties to import databases
Solved? Already addressed. Waiting for feedback.
biosupi asked Oct 13, 2019 in [R] · Unanswered

5
SCENIC-related questions

s-aibar asked Apr 11, 2022 in * General SCENIC questions · Unanswered

0
You must be logged in to vote

Cannot use Integrated data in SCENIC

Lumskie asked Mar 13, 2022 in [R] · Unanswered

1
You must be logged in to vote

Error message when running the first tutorial notebook

dyXDDD asked Jun 24, 2021 in [VSN] · Answered

2
You must be logged in to vote

Help with manual inspection of AUCell histogram for regulon binerization

Jeron1996 asked Mar 17, 2022 in [R] · Unanswered

0
You must be logged in to vote

identify regulons - custom gene list

paolo-kunderfranco asked Mar 1, 2022 in [R] · Unanswered

0
You must be logged in to vote

Why could a motif be enriched at 500bpUS and 100bpDS of TSS but not at 10kbp centered?

charlesgwellem asked Feb 2, 2022 in * General SCENIC questions · Unanswered

0
You must be logged in to vote

Loosing too many genes

charlesgwellem asked Feb 2, 2022 in [R] · Unanswered

0
You must be logged in to vote

Extracting regulon activity matrix

Lumskie asked Jan 28, 2022 in [R] · Unanswered

0
You must be logged in to vote

read in the mm10 specific feather files

sylestiel asked Jun 24, 2021 in [R] · Answered

2
You must be logged in to vote

importModulesGmt doubt

rosanababu asked Jul 16, 2021 in [R] · Unanswered

0
You must be logged in to vote

Visualizing SCENIC Weight Matrix

husain223 asked Apr 29, 2021 in * General SCENIC questions · Unanswered

0
You must be logged in to vote

Error in AUCell_plotTSNE when running runSCENIC4

ianfolkert asked Apr 2, 2020 in [R] · Unanswered

3
You must be logged in to vote

The parameter 'minPerc' in binarized version

XYZuo asked Apr 13, 2021 in [R] · Unanswered

0
You must be logged in to vote

Why I got regulons with fewer than 20 genes?

Sophia409 asked Dec 18, 2019 in [Python] · Answered

3
You must be logged in to vote

R aborted at the first step

linhch5 asked Dec 10, 2020 in [R] · Unanswered

0
You must be logged in to vote

running runGenie3 using a custom list of TFs

arijita88 asked Jan 7, 2020 in [R] · Answered

7
You must be logged in to vote

understanding the regulon output

nfancy asked Aug 16, 2020 in * General SCENIC questions · Unanswered

0
You must be logged in to vote

How does Rcistarget utilize two databases for scoring motifs?

KoichiHashikawa asked Aug 3, 2020 in * General SCENIC questions · Unanswered

0
You must be logged in to vote

can not load example data

fangling0913 asked Sep 11, 2019 in [R] · Unanswered

1
You must be logged in to vote

Number of TF in my dataset

PernilleYR asked Jul 2, 2020 in [R] · Unanswered

0
You must be logged in to vote

Would taking the average scores per cluster in the AUC matrix indicate more activity?

CodeInTheSkies asked Jun 16, 2020 in [R] · Unanswered

0
You must be logged in to vote

what mean should be on file 'Step2_regulonTargetsInfo.tsv' colname 'Genie3Weight'?

honghh2018 asked May 30, 2020 in [R] · Unanswered

0
You must be logged in to vote

Missing TFs

14lwt1 asked May 19, 2020 in [R] · Unanswered

0