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Merge pull request #25 from ogawa/devel-20190305
add system updates pages.
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,169 @@ | ||
| # System Updates | ||
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| <!-- | ||
| ## 2019-XX-XX | ||
| | Add / Update / Delete | Software | Version | Previous version | | ||
| |:--|:--|:--|:--| | ||
| | Update | CentOS | 7.X | 7.4 | | ||
| | Add | CUDA | 10.0.X | | | ||
| --> | ||
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| ## 2019-03-14 | ||
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| | Add / Update / Delete | Software | Version | Previous version | | ||
| |:--|:--|:--|:--| | ||
| | Add | Intel Compiler | 2017.8, 2018.3 | | | ||
| | Add | PGI | 17.10 | | | ||
| | Add | Open MPI | 2.1.6 | | | ||
| | Add | cuDNN | 7.5.0 | | | ||
| | Add | NCCL | 2.4.2-1 | | | ||
| | Add | Intel MKL | 2017.8, 2018.3 | | | ||
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| Other fixes are as follows: | ||
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| * Add PGI 17.10 support to MVAPICH2-GDR 2.3 | ||
| * Add PGI support to Open MPI 2.1.5, 2.1.6, 3.1.3 | ||
| * Change the default version of Open MPI to 2.1.6 | ||
| * Fix typo in MVAPICH2 modules, wrong top directory | ||
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| ## 2019-01-31 | ||
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| ### User/Group/Job names are now masked when displaying the result of 'qstat' | ||
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| We changed the job scheduler configuration, so that User/Group/Job names are masked from the result of `qstat` command. These columns are shown only for your own jobs, otherwise these columns are masked by '*'. An example follows: | ||
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| ``` | ||
| [username@es1 ~]$ qstat -u '*' | head | ||
| job-ID prior name user state submit/start at queue jclass slots ja-task-ID | ||
| ------------------------------------------------------------------------------------------------------------------------------------------------ | ||
| 123456 0.28027 run.sh username r 01/31/2019 12:34:56 gpu@g0001 80 | ||
| 123457 0.28027 ********** ********** r 01/31/2019 12:34:56 gpu@g0002 80 | ||
| 123458 0.28027 ********** ********** r 01/31/2019 12:34:56 gpu@g0003 80 | ||
| 123450 0.28027 ********** ********** r 01/31/2019 12:34:56 gpu@g0004 80 | ||
| ``` | ||
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| ## 2018-12-18 | ||
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| | Add / Update / Delete | Software | Version | Previous version | | ||
| |:--|:--|:--|:--| | ||
| | Add | NCCL | 2.3.7-1 | | | ||
| | Add | cuDNN | 7.4.2 | | | ||
| | Add | Open MPI | 3.0.3, 3.1.3 | | | ||
| | Add | MVAPICH2-GDR | 2.3 | | | ||
| | Add | Hadoop | 2.9.2 | | | ||
| | Add | Spark | 2.3.2, 2.4.0 | | | ||
| | Add | Go | 1.11.2 | | | ||
| | Add | Intel MKL | 2018.2.199 | | | ||
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| ### NCCL 2.3.7-1 | ||
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| The NVIDIA Collective Communications Library (NCCL) 2.3.7-1 was installed. | ||
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| The relase note will be found: [NCCL Release 2.3.7](https://docs.nvidia.com/deeplearning/sdk/nccl-release-notes/index.html) | ||
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| To set up user environment: | ||
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| ``` | ||
| $ module load cuda/9.2/9.2.148.1 | ||
| $ module load nccl/2.3/2.3.7-1 | ||
| ``` | ||
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| ### cuDNN 7.4.2 | ||
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| The NVIDIA CUDA Deep Neural Network library (cuDNN) 7.4.2 was installed. | ||
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| The release note will found: [cuDNN Release Notes v7.4.2](https://docs.nvidia.com/deeplearning/sdk/cudnn-release-notes/rel_742.html) | ||
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| To set up user environment: | ||
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| ``` | ||
| $ module load cuda/9.2/9.2.148.1 | ||
| $ module load cudnn/7.4/7.4.2 | ||
| ``` | ||
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| ### Open MPI 3.0.3, 3.1.3 | ||
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| Open MPI (without --cuda option) 3.0.3, 3.1.3 were installed. | ||
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| To set up user environment: | ||
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| ``` | ||
| $ module load openmpi/3.1.3 | ||
| ``` | ||
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| ### MVAPICH2-GDR 2.3 | ||
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| MVAPICH2-GDR 2.3 was installed. | ||
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| To set up user environment: | ||
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| ``` | ||
| $ module load cuda/9.2/9.2.148.1 | ||
| $ module load mvapich/mvapich2-gdr/2.3 | ||
| ``` | ||
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| ### Hadoop 2.9.2 | ||
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| Apache Hadoop 2.9.2 was installed. | ||
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| To set up user environment: | ||
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| ``` | ||
| $ module load openjdk/1.8.0.131 | ||
| $ module load hadoop/2.9.1 | ||
| ``` | ||
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| ### Spark 2.3.2, 2.4.0 | ||
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| Apache Spark 2.3.2, 2.4.0 were installed. | ||
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| To set up user environment: | ||
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| ``` | ||
| $ module load spark/2.4.0 | ||
| ``` | ||
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| ### Go 1.11.2 | ||
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| Go Programming Language 1.11.2 was installed. | ||
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| To set up user environment: | ||
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| ``` | ||
| $ module load go/1.11.2 | ||
| ``` | ||
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| ### Intel MKL 2018.2.199 | ||
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| Intel Math Kernel Library (MKL) 2018.2.199 was installed. | ||
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| To set up user environment: | ||
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| ``` | ||
| $ module load intel-mkl/2018.2.199 | ||
| ``` | ||
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| ## 2018-12-14 | ||
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| | Add / Update / Delete | Software | Version | Previous version | | ||
| |:--|:--|:--|:--| | ||
| | Update | Singularity | 2.6.1 | 2.6.0 | | ||
| | Delete | Singularity | 2.5.2 | | | ||
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| Singularity 2.6.1 was installed. The usage is as follows: | ||
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| ``` | ||
| $ module load singularity/2.6.1 | ||
| $ singularity run image_path | ||
| ``` | ||
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| The release note will be found: | ||
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| [Singularity 2.6.1](https://github.com/sylabs/singularity/releases/tag/2.6.1) | ||
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| And, we uninstalled version 2.5.2 and 2.6.0 because severe security issues ([CVE-2018-19295](https://cve.mitre.org/cgi-bin/cvename.cgi?name=2018-19295)) were reported. If you are using Singularity with specifying version number, such as `singularity/2.5.0` or `singularity/2.6.0`, please modify your job scripts to specify `singularity/2.6.1`. | ||
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| ``` | ||
| ex) module load singularity/2.5.2 -> module load singularity/2.6.1 | ||
| ``` |
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