Programs used in Pangenome study for Two component systems (TCSs)
- qcqa_pan.ipynb -> QCQA filters for genomes
- genome_hmm.ipynb -> Map TCSs operon
- hmm_result.ipynb -> Use PATRIC feature table file and extract TCSs using Histidine kinase and Response regulator
- heat_map.ipynb -> To make heatmap for TCSs used in Antibiotic resistance, Virulence, and others
- PCA.ipynb -> To make 2D- and 3D- PCA plots from TCSs features
Dependencies are available in individual programs
License: MIT