2.0.7 - Mongoose Tiger

Bug fixes

• Fixed issue that prevented the k-mer counting tools to be built in the Docker image.

2.0.6 - Tiger Butterfly

Bug fixes

Fixes issue #54:

• A minor bug that caused the first absence(kmer) rule's utility to not be computed correctly.
• An issue that caused the SCM code to crash when the learned model was empty (due to no rule being predictive).

2.0.3 - Squirrel Monkey

New features

• Fixed installation issues for DSK which prevented dataset creation from FASTA and FASTQ files.
• Minor code cleanup

2.0.1 - Elephant Vulture

New features

• Fixed some problems with the installer
• Dockerfile that installs Kover
• Docker image with Kover preinstalled (https://hub.docker.com/r/aldro61/kover)
• DockerHub automatic building of releases
• Minor documentation updates

2.0.0 - Seal Hamster

This is the official release of Kover 2.0.0.

New features

• Decision tree learning with the Classification and Regression Trees algorithm (Breiman et al., 1984).
• Multi-class classification for categorical phenotypes with more than two states

2.0.0 - Seal Hamster (Beta)

New features

• Decision tree learning with the Classification and Regression Trees algorithm (Breiman et al., 1984).
• Multi-class classification for categorical phenotypes with more than two states

Notes

• This is a beta release.

• The Kover 2 code has now been merged into the master branch and the documentation has been updated.

• The implementation has been extensively tested, but errors may still occur. Please report any runtime errors to the developers.

2.0.0 - Seal Hamster (Alpha)

New features

• Decision tree learning with the Classification and Regression Trees algorithm (Breiman et al., 1984).
• Multi-class classification for categorical phenotypes with more than two states

Pre-release

This is a pre-release. The production-ready version will be released once it has been merged with Master.

1.3.2 - Crocodile Hippopotamus

Bug fix

Fixed a bug that caused the backend to crash when using bound selection.

1.3.1 - Porcupine Duck

Change log

• Speed up the parsing of k-mer blacklists
• Fixed a bug in the scoring of rules that occurred when using a k-mer blacklist

1.3.0 - Lizard Zebra

New features

k-mer blacklisting

• Define a list of k-mers that are not to be selected by the learning algorithm
• Supported formats: fasta, text file with one k-mer per line