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Releases: alejandrogzi/gxf2bed

v0.2.2

27 Mar 15:58
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What's new on v.0.2.2

  • Allows translation without relationships to be compatible with Prokka outputs
  • To perform plain translation without hierarchy just explicitly declare --parent "" --child ""

v0.2.1

27 Feb 04:49
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What's new on v0.2.1

  • Fixes some rare GTF bugs due to extra '\n' at the end (malformed GTFs)
  • Adds test modules for record parsing and attr parsing
  • Build a nextflow module! Thanks to @edmundmiller!
  • Updates run times. Now gxf2bed is faster (~0.7s +/-0.2s) due to a change in the hashing algo (now using hashbrown)!

v0.2.0

20 Feb 04:25
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What's new on v.0.2

  • Now gxf2bed provides 3 new optional arguments: parent, child, feature
  • The parent argument can be used to specify the main node from which the new .bed file will be build. This could be interpreted as 'which feature (3rd column) I want my .bed file to be build from'
  • The child argument can be used to specify the child node from the bed file. This can be interpreted as 'which lines will compose my parent node information'
  • The feature argument can be used to specify what does gxf2bed will use as the names on the .bed file. Could be 'gene_id', 'transcript_id' or anything you want. You just need to be sure that this feature is present in all parent and child lines.
  • These new additions do not compromise the initial functionality.

v0.1.0

06 Feb 21:51
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v0.1.0