explicitly calling CODECOV_TOKEN #22
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| on: | |
| push: | |
| branches: [main, master, mongo_upsert] | |
| pull_request: | |
| branches: [main, master, mongo_upsert] | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Get runner IP | |
| run: echo "RUNNER_IP=$(curl ifconfig.me)" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Whitelist IP | |
| env: | |
| MONGO_API_PUBLIC: ${{secrets.MONGO_API_PUBLIC}} | |
| MONGO_API_PRIVATE: ${{secrets.MONGO_API_PRIVATE}} | |
| MONGODB_PROJECT_ID: ${{secrets.MONGODB_PROJECT_ID}} | |
| run: | | |
| curl --location "https://cloud.mongodb.com/api/atlas/v1.0/groups/$MONGODB_PROJECT_ID/accessList" \ | |
| --digest -u "$MONGO_API_PUBLIC:$MONGO_API_PRIVATE" \ | |
| --header "Content-Type: application/json" \ | |
| --data '[ | |
| { | |
| "ipAddress": "'$RUNNER_IP'/32", | |
| "comment": "Added via GitHub db-update action" | |
| } | |
| ]' | |
| shell: bash | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr | |
| needs: coverage | |
| - name: Test coverage | |
| env: | |
| MONGODB_URL_DEV: ${{secrets.MONGODB_URL_DEV}} | |
| CODECOV_TOKEN: ${{secrets.CODECOV_TOKEN}} | |
| run: | | |
| install.packages('remotes') | |
| remotes::install_github("allometric/allometric") | |
| covr::codecov( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package"), | |
| token = Sys.getenv("CODECOV_TOKEN") | |
| ) | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/package | |
| - name: Remove IP | |
| env: | |
| MONGO_API_PUBLIC: ${{secrets.MONGO_API_PUBLIC}} | |
| MONGO_API_PRIVATE: ${{secrets.MONGO_API_PRIVATE}} | |
| MONGODB_PROJECT_ID: ${{secrets.MONGODB_PROJECT_ID}} | |
| run: | | |
| curl --request DELETE \ | |
| --location "https://cloud.mongodb.com/api/atlas/v1.0/groups/$MONGODB_PROJECT_ID/accessList/${RUNNER_IP}%2F32" \ | |
| --digest -u "$MONGO_API_PUBLIC:$MONGO_API_PRIVATE" | |
| shell: bash |