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Release v0.5.0
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althonos committed May 28, 2021
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15 changes: 14 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -5,7 +5,20 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).

## [Unreleased]
[Unreleased]: https://github.com/althonos/orthoani/compare/v0.4.0...HEAD
[Unreleased]: https://github.com/althonos/orthoani/compare/v0.5.0...HEAD

## [v0.5.0] - 2021-05-28
[v0.5.0]: https://github.com/althonos/orthoani/compare/v0.4.0...v0.5.0
### Fixed
- Exception messages not properly rendering with `--traceback` enabled.
- Use `os.cpu_count` instead of `multiprocessing.cpu_count` where applicable.
- Make `BlockIterator` zero-copy using indices instead of slices.
### Changed
- Use `seqidlist` to reduce number of blocks compared in backward search.
- Switch to use BLASTdb v5 (instead of v4 previously).
- Prefix temporary files with `orthoani` prefix.
- Skip blocks containing more than 80% unknown nucleotides like in original implementation.
- Average ANI values based on HSPs instead of reciprocical blocks like in original implementation.

## [v0.4.0] - 2020-06-26
[v0.4.0]: https://github.com/althonos/orthoani/compare/v0.3.2...v0.4.0
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2 changes: 1 addition & 1 deletion orthoani/__init__.py
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__all__ = ["orthoani", "orthoani_pairwise"]
__author__ = "Martin Larralde <martin.larralde@embl.de>"
__license__ = "MIT"
__version__ = "0.4.0"
__version__ = "0.5.0"


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