Release v0.4.5

CHANGELOG.md

@@ -6,11 +6,24 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 
 ## [Unreleased]
-[Unreleased]: https://github.com/althonos/pyhmmer/compare/v0.4.4...HEAD
+[Unreleased]: https://github.com/althonos/pyhmmer/compare/v0.4.5...HEAD
+
+
+## [v0.4.5] - 2021-07-19
+[v0.4.4]: https://github.com/althonos/pyhmmer/compare/v0.4.4...v0.4.5
+
+### Added
+- `OptimizedProfile.convert` method to configure an optimized profile from a `Profile` without reallocating a new `P7_OPROFILE` struct.
+
+### Changed
+- Rewrite the `plan7.Pipeline` search loop to avoid reacquiring the GIL between reference sequences.
+- Require the reference sequences to be stored in a collection (instead of an iterable) when passing them to the `search_hmm`, `search_msa` and `search_seq` methods of `plan7.Pipeline`.
+- Avoid reallocating a new `OptimizedProfile` every time a new HMM is passed to `Pipeline.search_hmm`.
+- Relax the GIL while sorting and thresholding `TopHits` in `Pipeline` search methods.
 
 
 ## [v0.4.4] - 2021-07-07
-[v0.4.3]: https://github.com/althonos/pyhmmer/compare/v0.4.3...v0.4.4
+[v0.4.4]: https://github.com/althonos/pyhmmer/compare/v0.4.3...v0.4.4
 
 ### Added
 - `ignore_gaps` parameter to `pyhmmer.plan7.SequenceFile`, allowing to skip the gap characters when reading a sequence from an ungapped format.

pyhmmer/__init__.py

@@ -25,7 +25,7 @@
 
 __author__ = "Martin Larralde <martin.larralde@embl.de>"
 __license__ = "MIT"
-__version__ = "0.4.4"
+__version__ = "0.4.5"
 __all__ = [
     errors.__name__,
     easel.__name__,
@@ -44,12 +44,7 @@
     An online rendered version of the documentation for this version of the
     library on `Read The Docs <https://pyhmmer.readthedocs.io/en/v{}/>`_.
 
-    """.format(
-        # in the even the library is a CI build installed from GitLab, we
-        # just redirect to the stable version instead, i.e. not including
-        # the local component of the version (everything after the ``+``)
-        __version__.split("+")[0]
-    )
+    """.format(__version__)
 
 # Register collections using the `collections.abc` module (this is probably
 # not required with later versions of Python)